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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001130
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.182s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0083589.1
n.a. TatD related DNase [Theobroma cacao] gi|508718401|gb|EOY10298.1| chr0 33172360 33176446 -
3 domain predictions
1 GO term
Lj0g3v0083589.2
n.a. TatD related DNase [Theobroma cacao] gi|508718401|gb|EOY10298.1| chr0 33172360 33176446 -
4 domain predictions
1 GO term
Lj1g3v4752640.1
n.a. TatD related DNase [Arabidopsis thaliana] gi|42572645|ref|NP_974418.1| chr1 56774554 56778337 +
3 domain predictions
1 GO term
Lj1g3v4752640.2
n.a. TatD related DNase [Arabidopsis thaliana] gi|79442300|ref|NP_190807.3| chr1 56774554 56778337 +
4 domain predictions
1 GO term
LotjaGi1g1v0737900.1
n.a. TatD family; TAIR: AT3G52390.1 TatD related DNase; Swiss-Prot: sp|Q6P1N9|TATD1_HUMAN Putative deoxyribonuclease TATDN1; TrEMBL-Plants: tr|I3TAK4|I3TAK4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0737900 LjG1.1_chr1 131238259 131247980 +
4 domain predictions
1 GO term
LotjaGi1g1v0737900.2
n.a. TatD family; TAIR: AT3G52390.1 TatD related DNase; Swiss-Prot: sp|Q6P1N9|TATD1_HUMAN Putative deoxyribonuclease TATDN1; TrEMBL-Plants: tr|I3TAK4|I3TAK4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0737900 LjG1.1_chr1 131243831 131247085 +
4 domain predictions
1 GO term
LotjaGi1g1v0737900.3
n.a. TatD family; TAIR: AT3G52390.1 TatD related DNase; Swiss-Prot: sp|Q6P1N9|TATD1_HUMAN Putative deoxyribonuclease TATDN1; TrEMBL-Plants: tr|I3TAK4|I3TAK4_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0737900 LjG1.1_chr1 131244027 131247085 +
4 domain predictions
1 GO term
LotjaGi2g1v0119500.1
n.a. TatD family; TAIR: AT5G17570.1 TatD related DNase; Swiss-Prot: sp|P37545|YABD_BACSU Uncharacterized metal-dependent hydrolase YabD; TrEMBL-Plants: tr|A0A072UIG3|A0A072UIG3_MEDTR TatD-related deoxyribonuclease; Found in the gene: LotjaGi2g1v0119500 LjG1.1_chr2 43803864 43808482 +
4 domain predictions
1 GO term
LotjaGi2g1v0119500.2
n.a. TatD family; TAIR: AT5G17570.1 TatD related DNase; Swiss-Prot: sp|P37545|YABD_BACSU Uncharacterized metal-dependent hydrolase YabD; TrEMBL-Plants: tr|A0A0S3T987|A0A0S3T987_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0119500 LjG1.1_chr2 43804088 43807268 +
4 domain predictions
1 GO term