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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001351
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.612s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0129619.1
n.a. PREDICTED: 40S ribosomal protein S3-3-like [Cicer arietinum] gi|502122563|ref|XP_004497806.1| chr0 58682430 58685343 +
3 domain predictions
2 GO terms
Lj0g3v0129619.2
n.a. PREDICTED: 40S ribosomal protein S3-3-like [Cicer arietinum] gi|502122563|ref|XP_004497806.1| chr0 58684561 58685343 +
3 domain predictions
2 GO terms
Lj0g3v0165219.1
n.a. PREDICTED: 40S ribosomal protein S3-3-like [Cicer arietinum] gi|502122563|ref|XP_004497806.1| chr0 78432209 78432779 -
3 domain predictions
2 GO terms
Lj0g3v0188799.1
n.a. ribosomal protein S3 [Lotus japonicus] gi|13518476|ref|NP_084835.1| chr0 92318073 92319009 +
3 domain predictions
2 GO terms
Lj0g3v0236739.1
n.a. ribosomal protein S3 (mitochondrion) [Glycine max] gi|476507698|ref|YP_007516919.1| chr0 122679319 122680348 +
3 domain predictions
2 GO terms
Lj0g3v0327899.1
n.a. Os03g0577000 [Oryza sativa Japonica Group] gi|115453877|ref|NP_001050539.1| chr0 171390954 171392548 -
3 domain predictions
2 GO terms
Lj1g3v3330170.1
n.a. PREDICTED: 40S ribosomal protein S3-3-like [Cicer arietinum] gi|502122563|ref|XP_004497806.1| chr1 37938421 37940066 +
3 domain predictions
2 GO terms
Lj5g3v0747060.1
n.a. Os03g0577000 [Oryza sativa Japonica Group] gi|115453877|ref|NP_001050539.1| chr5 10923868 10925062 +
3 domain predictions
2 GO terms
Lj5g3v0747060.2
n.a. Os03g0577000 [Oryza sativa Japonica Group] gi|115453877|ref|NP_001050539.1| chr5 10924572 10928965 +
3 domain predictions
2 GO terms
Ljmitog3v0000110.1
n.a. ribosomal protein S3 (mitochondrion) [Lotus japonicus] gi|372450294|ref|YP_005090476.1| mito 52634 63407 -
3 domain predictions
2 GO terms
LotjaGi1g1v0556400.1
n.a. 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3S6J8|I3S6J8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0556400 LjG1.1_chr1 108856827 108864081 +
2 domain predictions
2 GO terms
LotjaGi3g1v0314100.1
n.a. 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3SJI7|I3SJI7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0314100 LjG1.1_chr3 66453266 66455830 -
2 domain predictions
2 GO terms
LotjaGi3g1v0527400_LC.1
n.a. 40S ribosomal S3-like protein; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3SJI7|I3SJI7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0527400_LC LjG1.1_chr3 94388609 94390783 +
2 domain predictions
2 GO terms
LotjaGi6g1v0008800.1
n.a. 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|A0A151SP15|A0A151SP15_CAJCA 40S ribosomal protein S3-3; Found in the gene: LotjaGi6g1v0008800 LjG1.1_chr6 1703450 1708020 -
2 domain predictions
2 GO terms