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LotjaGi3g1v0314100.1

Overview

Field Value
Gene ID LotjaGi3g1v0314100
Transcript ID LotjaGi3g1v0314100.1
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3SJI7|I3SJI7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0314100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:66453266..66455830) extracted from Lotus japonicus Gifu genome v1.2.

AGAAACCGTTGGATCAGCATCCCCCACTACATATGAATACCCCTGATTCTCATTTCTCTGCGCCTCAACTAAAATTAGGG TTTAGAGTGAGTCCAGTATCTCAGATCTCGCGCCTCTTCTCTCTCCACCTTCCTTCTCATTCGCGACAATGGCAACCCAA ATCAGCAAGAAGCGAAAGGTAAATTCAACTTCCCCTTCGTCAATTTCCTTCTCCATTCCAATCCACGGTTTCCGACTCTG ATCGTGTGTTTGCACTTTGCATTGTTCAGTTTGTCGCTGACGGCGTCTTCTTCGCTGAATTGAACGAGGTTCTGACACGA GAGCTCGCTGAGGATGGATACTCTGGTGTGGAGGTTAGGGTTACCCCGATGAAAACCGAGATCATCATCAGAGCCACTCG AACTCAAGCCGTTCTCGGTGCGTTTCGATTTTTGAACTCTAGATTGTGGTGGTTATTGAATCTGATTTTGGGGTTTTGGT TTTTTGTGATTAGGTGAGAAGGGAAGGAGGATTAGGGAGCTTACCTCTGTGGTGCAGAAGAGGTTTAAGTTTCCTGAGAA CAGTGTTGAGCTCTATGCTGAGAAGGTTAATAACAGGGGGCTTTGTGCTATTGCCCAGGCTGAGTCTCTTCGCTACAAGC TTCTTGGTGGCCTTGCTGTACGGAGGTATGTGCATACATGCATTAGCAAAATTAATCTTATTGGTTTATGGTGGCTGTTT CAAATGTTGTATCTATCTATTTGATTAGGAACTACTATCATTGTAGAATTTCTGTGTCTGTTATATTGATTTAAGTTTTG CTAAACATGATTTTATCTGTGGTAGAAAGAATTTTGCTTGTTATTGTAGCATCAGGGTTATCAGTTTTGACTTGGTTAGG GAATGTATCAATGGAACACTCATTGAACTAGTGAGTCGCGAGTAACTGGTGTATGTTGAAAAATTATAAGAAGTTTATAG TGAGCGCTAGTATTGTTTAACAAGTTAATACTTGAAATTGAAACCCATTTCCATCACAGTTACCTATCTAAACAACCTAC AAAGAAGATTTTACAAACAAAAGGTCACAAATAAGTTGAAAACATCATCAATACAACCTTTTTCAATTCTAATTATCAGC TCGGACTGGCTATTTGACAGGGTTTCTGGCCTTACTGGTTCGACCAGCTTGTTTAAGCTGAGTTTGAAAATGCTGTATTG TAGTATGTATATTGTTTGTGTGTCACTGTTTTTTCCTTGTAATGGGTTTCTGCTGTATTTGTTTATATTTCACCATGTTG GCTGGTAGTTTTTAAATTTTCTGTATTTTCACGACCTCTTTGTATTGTGGACTGGTAGTTTTTAAGATTTTCCCATTTTT ATTTGCATCAATAGTTCAATACAATTTTTATGTGTTTTGTGGGAACATTAAGAATTCTTCCATGTCTCAAACCATTTGTT GCAGGGCTTGCTATGGTGTTCTGAGATTTGTTATGGAGAGTGGCGCGAAGGGATGTGAGGTTCGTTCTGTTGCAGCAGCT CTGAACTACTGCTATTATTTGCTTTCTTTAATGAGTTGGTGGTAATGGTCGTTTGATTTGAGCAGGTCATAGTCAGTGGA AAGTTGAGAGCCCAGAGAGCTAAATCCATGAAGTTCAAGGATGGATACATGATTTCTTCTGGGCAGCCAGTCAAGGATTA CATTGACTCTGCAGTGAGACACGTGCTACTCAGACAGGTTTGCTTCTTTTTTGTAGATGTCTGATAGAGTTTTTTTTTTG TTGCCAACATTCATCAATTGTATTATCATGTGTTGCGATGGCATTGATGAAATTTCCTTTACCATCTTATAGGGTGTACT TGGTATTAAGGTGAAGATCATGCTTGACTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCACTTCCTGATATTGTCA CAATCCACACTCCAAAAGAGGAGGACGAATACATCCGACCTGCTGCTGTTTCGGCGGAGGAAGTTGAGGTCCCAGTCGCA GTTGCTTAAAAGGTTTTTATTTCTCCGGAGTAGTAATTCACAGTAGCTGAGTGGCTGGATTTTGTTTATGCTATGTTTCA AAACCTCATCAAAATTTTGTAGTTTCTCAACTGTTGTAAAAGTCGTTATACTTGGGGTTGGTTACAAGGATTGCATTGAT TGTTTTTTTTTCATTACCTTAAGCAGTTAGAATTTTCAGTGCGTTTCATGGCGTTGATTTGTGAAATTCGTTCCTTGATG TGTTTGGATACTAGTTCAGTGAACGCAAATATAATTTAATATGATTCTATCAGAGACTTGTTCATTTTTTTGTCTCTACG CGAGTGTTAACTTCCGTTCACTTTAGATGGTATTCAAAACTGTATGTAAATTTACATCTAAACAAAAGCTTAATGAACCA TGGATCTTCTTTCCAAAAGTTCATTCTTTGACAGTGTTTTGGTTTCTCATCCTGCACTCTAGAATTGCATAAATGAGCTA GACACTCTTACTGGCAACAGCTTAAAATACCCAGCTTAGTTTGAGTGATTAAAGTCAATATTTCACTATTTTAAGAAATA ATTTT
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0314100.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACCCAAATCAGCAAGAAGCGAAAGTTTGTCGCTGACGGCGTCTTCTTCGCTGAATTGAACGAGGTTCTGACACG AGAGCTCGCTGAGGATGGATACTCTGGTGTGGAGGTTAGGGTTACCCCGATGAAAACCGAGATCATCATCAGAGCCACTC GAACTCAAGCCGTTCTCGGTGAGAAGGGAAGGAGGATTAGGGAGCTTACCTCTGTGGTGCAGAAGAGGTTTAAGTTTCCT GAGAACAGTGTTGAGCTCTATGCTGAGAAGGTTAATAACAGGGGGCTTTGTGCTATTGCCCAGGCTGAGTCTCTTCGCTA CAAGCTTCTTGGTGGCCTTGCTGTACGGAGGGCTTGCTATGGTGTTCTGAGATTTGTTATGGAGAGTGGCGCGAAGGGAT GTGAGGTCATAGTCAGTGGAAAGTTGAGAGCCCAGAGAGCTAAATCCATGAAGTTCAAGGATGGATACATGATTTCTTCT GGGCAGCCAGTCAAGGATTACATTGACTCTGCAGTGAGACACGTGCTACTCAGACAGGGTGTACTTGGTATTAAGGTGAA GATCATGCTTGACTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCACTTCCTGATATTGTCACAATCCACACTCCAA AAGAGGAGGACGAATACATCCGACCTGCTGCTGTTTCGGCGGAGGAAGTTGAGGTCCCAGTCGCAGTTGCTTAA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0314100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATQISKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMKTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFP ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS GQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEDEYIRPAAVSAEEVEVPVAVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11760
1 235 235 9.1E-156 –
PANTHER
PTHR11760:SF30
1 235 235 9.1E-156 –
Gene3D
G3DSA:3.30.300.20
1 92 92 4.9E-48
IPR015946
TIGRFAM
TIGR01008
8 210 203 1.2E-71
IPR005703
SUPERFAMILY
SSF54814
10 99 90 1.87E-25
IPR009019
CDD
cd02413
15 95 81 1.98536E-50 –
Pfam
PF07650
20 93 74 8.1E-13
IPR004044
ProSiteProfiles
PS50823
21 92 72 11.493
IPR004044
SUPERFAMILY
SSF54821
93 191 99 3.66E-28
IPR036419
Gene3D
G3DSA:3.30.1140.32
93 236 144 6.1E-72
IPR036419
Pfam
PF00189
106 188 83 6.7E-25
IPR001351
ProSitePatterns
PS00548
147 183 37 -
IPR018280

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0314100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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