Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0556400.1

Overview

Field Value
Gene ID LotjaGi1g1v0556400
Transcript ID LotjaGi1g1v0556400.1
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S3; TAIR: AT5G35530.1 Ribosomal protein S3 family protein; Swiss-Prot: sp|Q9FJA6|RS33_ARATH 40S ribosomal protein S3-3; TrEMBL-Plants: tr|I3S6J8|I3S6J8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0556400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:108856827..108864081) extracted from Lotus japonicus Gifu genome v1.2.

GTCAAATTAAAAAAAAAATATTATGAATTTATATTTTTAGCTAAAAGTCACTCATTCCTTGAGAAAAAATTCAGGTAATC TGGTCCGTTGGATACGAAGCCCAAAAATGTGTGGGTCGTTGGATTGGCTTCCCATTGACAAATAAATAGGAGCATTTTCT GAGGCAAAGCAGATTAGGGTTTGTGTTGCTCCAGAGCTGCGGTGGTTGCGGTCGTCCTGTGTTACACTTCCTTCCGAACT CTGAACCATGGCAACTCAAATGAGCAAGAAGAGAAAGGTGAATGAATCAATCGAAACTCACCCTTCATTCATTGTTCTCC TTAGTTTGATCTGTGTTGTTAATATAATTTTTGTGTTTGTGTGTGTAGTTTGTGGCTGATGGCGTTTTCTTCGCTGAACT GAACGAGGTTCTCACCCGCGAGCTCGCTGAGGACGGTTACTCCGGTGTGGAGGTTAGGGTTACTCCGGTGAAAACTGAGA TCATCATCAGAGCCACTCGAACCCAAGCCGTTCTAGGTACTACATACATACACTGATACACACATTCAATTTTTCAATTT TTTTGTTGCGCTGATTTTGGAATCTGATTATGTATTTGATAGGTGAGAAGGGTAGGAGAATTAGGGAGCTTACCTCAGTG GTATCGAAGAGGTTCAAGTTTCCTGAAAACAGTGTGGAACTCTATGCTGAAAAGGTTAACAACAGAGGCCTTTGTGCCAT TGCCCAAGCCGAGTCTCTCCGCTACAAGCTCCTTGGTGGCCTCGCCGTAAGGAGGTATTTGCTAAATGAATCTTATTGGT TTATTGTGATGGGCATTGCATTCAATTTAATCTTAGTGTGTCGATGTTGATAATTACGAATAACATGATTAAAGATATAC TACTGCAACCCAGTAACTGATGTCTTGTGCATTGATGTTTTATTAACATAAGGCGGAGAGGGTTCTTTTCTTGCTTTTGC TTTAATGCATTTGTGCAATATTTGTTGGCTGGTAGTTTTGTTAAAATTATTCGTAGGGTGTGTTTGGTTCCACATAGGGG AGGGGGGGGGCGAAGAAATTTTGATTCTTATCATGTTTGGTTAAGAGGGGGGGGGGAGAGGAGGTGAGGGGACATAACCC CTTTCTTTTGTGGTTCATGATGGGAGGGGAAGGATTTTAAAACAAAGTTACATTACTTCATGAAATATTTACCCTTCAAT TCCCCCACCCCACATTTGGAGGGGATGCAAAATTGAGTTATGAGGGGTTTCACCCCTCTCCATTCCCCTCCTTAAAATTG AACCAAATAAGTTTTAGAAAACCCCTCTCCTCCTCCTTTCCCTTCCAGTCCCCTCCAACCAAACACTATGTTATATTATG TGTGGCGGTGTGTTCTTGAGTACTGGTTTTTTTAACACTTTCTGTTTTAATCTGCTTGAATACAATGCTTGTGTTTATGG TCATATTACTTACAATTCATGTCTCATGCTTTTTTGTTGCAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTG GAGCCAAGGGATGTGAGGTTTGTTCTACAGAAGCAGCTTTGAACTCCTATTTTTTTGTATTGCTTCAAGTAATGACCTGC TTGCAATTGCTTTTGTAATTTGAGCAGGTGATTGTTAGTGGAAAACTGAGAGCACAGAGAGCCAAATCTATGAAGTTCAA GGATGGGTACATGATTTCTTCTGGGCAACCAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTGCTCCTCAGACAGG TTTGCTTCACTTCGTAGATACCTAATTAGAAGTTTTTCTGGCCCTAGTATTTTCAAGCTCATTTTTTTCAATTATGCAGT GATGGTACTGATAATTTTTCTTACTATCTAATAGGGTGTACTTGGTATCAAGGTTAAGATTATGCTTGACTGGGATCCTA AAGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATATTGTTACAATCCACTCTCCGAAGGAGGAAGACGAATACATTCAG CCTGCTGCTGTTTCGGCAAGTGATATCGAGGTCCCTGTTGCATGAAAATGTAATAGTTGAGTGCCTAGTTTCTTTCATGC ACTATTTGTTGTCAAAGACTTAGTTCAAAATTTTGTAGTTTCGTTAATGCCTTTTAAAAATTCTTATACTCAATTGCAAC TATTTAAGCATCAATCTTTTTTTTTCATTACCTCATGGGAAACGCCTAATACGCTGCAGTAAAATATGAACCTTCCTTTG TTAAGAATCTTGTTATAAGCAGTTATGCCAAACACTCACTAGAATCTTCTCCTCACCCTTTACCCTCACCCCCATTTCCT CTTGTGAAATGCATTATTTAGCGTTTTGCTAATAATGGCCTTCCCACTAATGTGCTTTGATTATATAGACATCTGATATT GATGTTGTATGTGTCGCATTAAGGCAGTGTGTGTGGATCATGTCTTTTGAAATTATCCTCTTGAAAAGTCTATTTGGTGT AAGCTTTTTCCGAATGACGAGCTAGTTGTCTTCTTTTGTTAAGAATTCTTGTTAGAGAGAATGTGTTGGATACTTCGAAC ATAACTGGTGTGTTGAGTGAAATTTAGTTTTAGTGTTACCTTGGTTTCCGTGTTGAAGCGTAGGAACACTTGTTTTTTAA TGATACCTTAGCAAGTCTTATTAATATGTGCAATGAGATTATGGCTAATGTGTGTATCATTAAAAAGACTATATGGAAGT CACTTGTAAATTGTGTTAGGGGGAACTTGTCCAAATTTTATGGCATTCGTTGATCCCCCCTTAGGATGAAGATTTGGTAA AGCTTAATTTGATGGTGCTTTTTCTTCGTCAACAAATATAGTAGCTTGTGGTGGAATAGTTTGGGAACATTTCGGTGCTT TTGTTCTTGCGTTTTCCAGTATGTTGGCCACGTGTACTGCTTTACATGCTGAACTTTAAGGGATTTTAACATATTTGAGG TTGTTGGAAGAGATTGGTTATCAGCAGATGTTTATTGAGTCTGATTCTCCTTATGAGATGGGTTGTGGGAACTCTCATTC TTGTGCTGTTTTGATTCATTTGATTGAATCTCTCCTAAGAAGATTTGTTGCTATTAGCTCGAGCTATACCTTTAGAGAAG CTAACACGGTTGTGAATGCATTTACTAAACATGACTTATCCTTGTCTATCCCCATGAAAGCTTGAGTTTCTTCCAGCTTT TTGTTATGTCTCTTTTTTATTATATTGTGTTGCTACAATTTATCGTAGAGGGTTATACTGTTATAGGAGTTTTTATGTTT CTTTATGTTGCTTGGGCGTGAGCCCTCTTCACTCATCGAAAATAAATCAGAATTTTTCGTAAAGAGTTGTTCAAGCTAAT TTATGTTTATGTTACTGGACCTTCAAACCATTAGATATGAAGTCTTTAGCTGTAATATCAAGAAAAAAAGGCGTAAGTAC ACTTAGCTTCCATTCATGTACTGTGAAAAATTATAAAGTCCTGCATCCAATTTGAGCGCATGCCAAAAAACTACAAGTTG GATCAGATCTCAGAAGAATAAAGTCACAAGGATAGCCAACATTTTACAAGAGCTCCACCACTTTGAATCTTCCATTATAA GCCTCCCATTATTGGAAATAACATCGTTACTTGAGTTCTAGTCCTCAGAAAAAGAATCAATATCTTCTGTTCTTCTAGCA TGAAAATATTTGCCTGGTGTATTTGAATTCAGTTTCATTTTTCAGATAGAGTAGCTATCAGCTCGGATTTTGCCTTCTCG AGAGCACTGGTCAAGTTTTCAGGCTTCCTCCCACCAGCCTGAGCAAAATTAGGCCTTCCACCTCCGCCGCCACCACATAA CTTTGCTATTTGCCCAATAAACTTACCTGCCTGAATCCCTCGATCAACCACCCCTGGAGTAAAAGCAGCCACTAGACTAA CCTTCCCTTCACCTGGACATGAGCCCAGTACAACAGCTGCTGGATCTGTTAGTGTTTCCACTAGATATTCTGCGGCACTT TTAAGTGACTCAGCATCCACATCATCCAAACACTCAACTAGTACTCTGAAATTTCAATAGATAAATAAAGATTTCACATC TAATCAAATGATCAATCGATTAATTAATTTTCGAAGATTTCTTTTTAGTCCTACCAACTTTGAACAAGATATGGAAATAT ACATACAAAGAACATCATGTCAATTTCTGGTTATTTGTGGGCATTCACAGAAATATAACAATCAATTATATGACACAACA CCTCTGCTTCTTAATTGTCACGACATGATAAACTTAAATGTTCAAAAGTTGAAAGACTTATATATCAAAGAAAACATCAT TCACCTTCTCCCTGAGTTATATACAGTAGTTAGTACACCTTAGTAATATTAAATTGTGTCACCAGAAAAGATTTTTCAGG CTGTTAGCAAGGGAGAAAGCCAGTCCTCTCCCAAATGATATATTAACATATACAACAATATGGAGAAATATTACCTGTAC TGTTTTGAATTCCCGATCAACAATGCCTTGCTTGCAATAGCCGAAGCTTTGTAGACTGCTGCTTTTGCACGCATAGCAGA AATTTCATTTCTTGCTATACGCAACTCCTCTAAAAGGTTTTCTATCCTTGCCGTTACCTCTTCAGGTTTAACCTTCATAA GGTGATTAAAAGTGATTGAAGAAATGGCATATGCAGAAAATGATCAAGTCAACCAAACCCGGCTATATTTATTTTATTAA GAAAATAGAATAAAGATTATAGACATAAAGGAAATACTAAGTATTTGAGCAACATATGCAATAATGACCCCAAATATACA ACCACTTAAGACGGTCAGAAAGTTCATTATCTGGCATGCTTAATCCATAATGAAACAACAAGTTAATCCTTATAAGGCAT AAAGGAAATGCAAATACCCAGGTATTTTAGTAACATGTGCTTCTTTCTTCCAGGTTATGATCAATGGCTATCTTGTGCAA AATATGGTCTTTTCTTTCATCGCTAGGAAAGTCTACAGAGTTATAGGATATTAGGATCAAGACTTAGGATAACCCTTTCC CATTTACCATTGAGCATTGTATCTCTAAATTTGTTCATCACAAATAGGTAAACAAAAGAATGCTTACGTTCACACATTTA TATAATTAAAAACTGGCTACATTAGTCTTATGACACATGGATATTAACACGACAAAAAAACTATGGTCCATGTAGATGAC AATGAATATTAATTGGTTCTCTAGAAATTGGATAATAGATATCCAAAACTTAAGCAGGATTGTGAAGAGCCAAAGATCAT GAACATACTTTGAGAGTGGAACATAGTTGCTTGAGATAAAAATCTCGAGAATTGACATATTCAATGCAAGCTTCCCCAGC TACAGCTTCTATACGCCTTATTCCAGATGCAATACCCTGCTCTGAGATTATTTTAAAACCACGAATTTCAGAAGTATTAC CGACATGAGTCCCTCCACAAAGTTCAAGTGATACACCAGGAACGTCTACAACACGTACCTGCAGCACACAAAGTTTGAAG GCTACAAGAGGCTGTACACACCATATCAACTAAAAAGAAAATATCATATATATATATATATATATTTATAATCCTTTCCC TGATTGTCAAGAGGTAGTTATTCATAATCAATTGAACAATAAAGTTCAATATAAAAAAGTTTGTGTAGTATAATACTACC TCTTCTCCATATTTTTCTCCAAACATTGCAATAGCTCCAGCTCTTTTTGCATCACTAAGAGGCATCACTTTAGTTTGAAG AAGTACCGCATCCTCAATCCATCCATTGATCAGCACTTCTATTTCTGCAAGCTCACTGTCGAGAAGTGGTCGGTGGAAGT TGAAATCAAATCTCAGACGATCAAATGCCACCAAAGAACCAGCTTGCGAGGTCTCCTGACCAATGACTTTTTTAAGAGCA GCTTGTAGTAAATGAGTAGCAGTATGATGAACCTACAAAGCACCAATTCCATTTACCATAATCTTGAGCTTGTAAGCTTG AAACTTGGAACTATGATGATGTAAAGATTTATCTTTATCAAATTTTATGAGCAAGGATTCACCAGACAAGTAAATGAAAT GGTAAGCTTGCAATTCTTGTACCTTAGCACGGTGCCTCAGCTTTACATCCACTGCTGCTTCCACTTCTATTCCAACCTCC ACAACACCCTTTCGGACTGTACCCTTGTGAACAAATATGTTACCTAAAGATTTCTGAACATCTATTATCTCTACAACAGC TTTTTGTTGATTCTCATCCCCTGAAATATATAGAAAACCATGATCTCCAATTTGTCCCCCTGATTCAGCATAAAATGGAG TCTTGTTCAGCAAAATTTCCACATTACTCCCTTCACTAACCTGCACAGCTGGATCACCATTTACCACCAGGCTTTCTACA ATTGCTTTACAATAAAGACTGTCATACCCAATAAATTCAGTGTCAGGTACATTTTCTGCAATATTTGCCCCATTTCCAAT GGAAAGTTTGACAGTATTATGTGCAGCTTGAGATTGACGCCTTTGCTTATCCATCTCCATCTCAAAGCCATTCATATCAA TACTCACGCCACGTTCTTCAGCCACTTCTTTTGTGATCTCCATTGGGAATCCATAAGTATCGTACAAAAGGAACACATCT TCACCAGCTAGGCAAGGTACAGTTCCATTTCTTCCGGCACTTGATAAAGCACCAGCAAGCTTCTCCTCAAGCAACTTCTC TCCTCTCTCTAGGGTCTGCACAAACCGAAGCTCTTCTCTCTTTAACTCCTCAAGGATACGGGGTGATCTGTTTTTCACAT CAGCATCAATGTGTGTACTCAACTCCACTACTTTCTCAGCAATAATAGGTACAAATGCTCCTTCAGGGTCTCCTTTACCA TCACCCTTTATACCAAGCAACCTGCCTGTACGAACAACCCTTCTGATAAGCCGCCGAACAACATAACCTCTCCCCACATT TGATGGGACAACACCATCAGAGATGAGAAACACAATTGCACGCATGTGATCTCCTATAATCTAGATAAATTGAAAAAAGA AAAAGAAATGATAATACATAAAAGTAATAAGAAATATGGTTGAAATAAGCTATTGAAAATTGTACCTTGTTTGGAGATAA TCATACTTACTTTCAGATTTCTCTTTGTAAGATCATCAGAAATGCTATACGAAACATTTGCCAATTCAGAGGCCTTCTCT ATGATGGGGAAAATCAAGTCAGTTTCATAATTGTTGGGAACCTGCAGTATACACT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0556400.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAACTCAAATGAGCAAGAAGAGAAAGTTTGTGGCTGATGGCGTTTTCTTCGCTGAACTGAACGAGGTTCTCACCCG CGAGCTCGCTGAGGACGGTTACTCCGGTGTGGAGGTTAGGGTTACTCCGGTGAAAACTGAGATCATCATCAGAGCCACTC GAACCCAAGCCGTTCTAGGTGAGAAGGGTAGGAGAATTAGGGAGCTTACCTCAGTGGTATCGAAGAGGTTCAAGTTTCCT GAAAACAGTGTGGAACTCTATGCTGAAAAGGTTAACAACAGAGGCCTTTGTGCCATTGCCCAAGCCGAGTCTCTCCGCTA CAAGCTCCTTGGTGGCCTCGCCGTAAGGAGGGCTTGCTATGGTGTTTTGAGATTTGTTATGGAAAGTGGAGCCAAGGGAT GTGAGGTGATTGTTAGTGGAAAACTGAGAGCACAGAGAGCCAAATCTATGAAGTTCAAGGATGGGTACATGATTTCTTCT GGGCAACCAGTCAAGGATTACATTGACTCTGCAGTGAGACATGTGCTCCTCAGACAGGGTGTACTTGGTATCAAGGTTAA GATTATGCTTGACTGGGATCCTAAAGGGAAACAGGGTCCTAAAACTCCCCTCCCTGATATTGTTACAATCCACTCTCCGA AGGAGGAAGACGAATACATTCAGCCTGCTGCTGTTTCGGCAAGTGATATCGAGGTCCCTGTTGCATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0556400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPVKTEIIIRATRTQAVLGEKGRRIRELTSVVSKRFKFP ENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISS GQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHSPKEEDEYIQPAAVSASDIEVPVA
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11760
1 235 235 1.6E-154 –
PANTHER
PTHR11760:SF30
1 235 235 1.6E-154 –
Gene3D
G3DSA:3.30.300.20
1 91 91 1.4E-46
IPR015946
TIGRFAM
TIGR01008
8 211 204 5.7E-71
IPR005703
SUPERFAMILY
SSF54814
10 99 90 1.35E-24
IPR009019
CDD
cd02413
15 95 81 8.09181E-50 –
Pfam
PF07650
20 93 74 1.2E-11
IPR004044
ProSiteProfiles
PS50823
21 92 72 11.105
IPR004044
SUPERFAMILY
SSF54821
93 191 99 3.66E-28
IPR036419
Gene3D
G3DSA:3.30.1140.32
93 231 139 9.3E-72
IPR036419
Pfam
PF00189
106 188 83 6.5E-25
IPR001351
ProSitePatterns
PS00548
147 183 37 -
IPR018280

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0556400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…