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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001529
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.422s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v5038210.2
n.a. PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis sativus] gi|449446776|ref|XP_004141147.1| chr1 61702538 61704418 -
2 domain predictions
1 GO term
Lj4g3v2267660.1
n.a. PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis vinifera] gi|225431922|ref|XP_002276956.1| chr4 31657210 31661069 -
3 domain predictions
1 GO term
LotjaGi1g1v0794700.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT1G01210.1 DNA-directed RNA polymerase, subunit M, archaeal; Swiss-Prot: sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10; TrEMBL-Plants: tr|I3SSH7|I3SSH7_LOTJA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi1g1v0794700 LjG1.1_chr1 136577382 136579975 -
2 domain predictions
1 GO term
LotjaGi4g1v0330000.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT3G16980.1 RNA polymerases M/15 Kd subunit; Swiss-Prot: sp|Q6NLH0|RPB9A_ARATH DNA-directed RNA polymerases II, IV and V subunit 9A; TrEMBL-Plants: tr|A0A161X1P6|A0A161X1P6_DAUCA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi4g1v0330000 LjG1.1_chr4 70920200 70924230 +
3 domain predictions
1 GO term
LotjaGi6g1v0257100.1
n.a. DNA-directed RNA polymerase subunit; TAIR: AT3G16980.1 RNA polymerases M/15 Kd subunit; Swiss-Prot: sp|Q6NLH0|RPB9A_ARATH DNA-directed RNA polymerases II, IV and V subunit 9A; TrEMBL-Plants: tr|A0A1J7H2A0|A0A1J7H2A0_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0257100 LjG1.1_chr6 56994991 56998204 +
3 domain predictions
1 GO term