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Lj1g3v5038210.2

Overview

Field Value
Gene ID Lj1g3v5038210
Transcript ID Lj1g3v5038210.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Cucumis sativus] gi|449446776|ref|XP_004141147.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11239
1 111 111 2.00E-45 –
Gene3D
G3DSA:2.20.70.10
1 34 34 2.10E-06 –
PANTHER
PTHR11239:SF12
1 111 111 2.00E-45 –
PIRSF
PIRSF005586
1 111 111 2.80E-26
IPR012164
SMART
SM00661
2 56 55 7.80E-06
IPR001529
Pfam
PF14803
3 34 32 4.10E-06
IPR029401
SUPERFAMILY
SSF57783
50 111 62 2.10E-19 –
Gene3D
G3DSA:2.20.25.10
59 111 53 3.50E-22 –
CDD
cd10509
63 110 48 3.29E-21
IPR034014
ProSiteProfiles
PS51133
67 109 43 13.64
IPR001222
SMART
SM00440
69 110 42 3.40E-17
IPR001222
Pfam
PF01096
70 109 40 3.90E-17
IPR001222
ProSitePatterns
PS00466
71 108 38 –
IPR001222

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0006351
Biological process Transcription, DNA-templated The cellular synthesis of RNA on a template of DNA.
Subterm of
Part of
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of
GO:0042779
Biological process TRNA 3'-trailer cleavage Cleavage of the 3'-end of the pre-tRNA as part of the process of generating the mature 3'-end of the tRNA; may involve endonucleolytic or exonucleolytic cleavage, or both.
Subterm of
Part of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj1g3v5038210.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5038210.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.