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Field | Value |
---|---|
Gene ID | LotjaGi4g1v0330000 |
Transcript ID | LotjaGi4g1v0330000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | DNA-directed RNA polymerase subunit; TAIR: AT3G16980.1 RNA polymerases M/15 Kd subunit; Swiss-Prot: sp|Q6NLH0|RPB9A_ARATH DNA-directed RNA polymerases II, IV and V subunit 9A; TrEMBL-Plants: tr|A0A161X1P6|A0A161X1P6_DAUCA DNA-directed RNA polymerase subunit; Found in the gene: LotjaGi4g1v0330000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:70920200..70924230) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAAAAACACCTCTCAACATAAACTAATTAAGAAAAGTGTTAATTCCGGTCATCTCCCCTGCAGTCAATCACCTCCTT TAAAATTCACCCCTTCCGTTCCTCACTCCACATAATTTGGGCGTGTGAAGTAGGCAGGCAGAAGATCCCGCCAAAAAGGG TCGCTCTCCTCCTTCATTCGAAGATGAGCTCCATGAAATTTTGCCGCCGATGGTCCGAACTTCGTTCCCATTTTCCACTC AATTCCTTGCATTCGCTACTCTTTCTACTCGATTTTGTTCACCATGATAGTTTTCATGAATGCTTGTTCTGTTTGTTGTT CGTTCTGCAGCAACAACATTCTGTACCCTAAAGAGGACACGGAGCAGAAGGTTCTCTACTACGCTTGCCGCCACTGCAAC CACCAGGTTCTCCTTCTTCTCCTTCTTCTTCTCTGATTCCCTCTCTAATTTCTCCATTAATCTCGTGTTCTGCATTATCG TTGAACAAAGTGAAAACCCTCACCACCACTGCTCTAGATCTGTAACCGCTTCTTCTTCTTCGTTAACCTAATTTTCAGTG CTTGGCTAAACCTAGACATTAGTGCTCTCTTGCATGTACCAACTGGTCACCATTTTACACTGAACATTCCACTGATTAAA TGCTGGTAGCATGGATTTGCTTGGATTTGGGTGTGAAGATTGTACTGTACTGTTGCTTTTGAAGATCCTCATATTTCTCA GTTCTCTGATCAACATTTTGATTTTGATTTTTAACAAGAACTGCATTTATCCACTATATAATTTTCTACCAGGTTGAAAG GAAGATGACTTGTTATTTCCCTATTGTATAGTGTATATTGATATTATCCATAATGGTTTTTCTTTTGTTTTCATAGTTGA CTTGTATGTTTACTGATTGTGTTTATATTTCATGTCAAAAGTATTGAGGATAGACTTGCATGCTGTCTTTGATTCATGTC TTTTGGTGGAGGTATCTTGCTATTGTTTCAAGGGCTTAAGAACTAAGATCTCTCATTTGTTATTTACTCACTTCTTGTTC TATTTCCCTCCTACGTTATTATCGATAATGTAAAATTTTGTGCTTCAGCAACTGTCTTCATTTGGTGCTTTGGTGATCAG ATTTTAAGACAACTCTATTAAGCCCTATACGTTTTGTTGCTTTTGCTTATCAAATTGTAATCGTTGGTTGTGTTCAAGGG ATCACATTCAAACAATGTTGTGAAATTACCGATATAGCCGTGCTATAGCATAGCGCTCTGAGGGCTATCCTCTATTTGCC TCTATTTTCCTATTTTACTGCATCCAATTTTTACTTGTCACTTGTCAGTGAAGTTTGGATATCCCTGTCTGACCAGTTAT TTACTGTTGATCAGGAGATTGCAGATGATAACATTGTCTACAGAAATCAGATACGCCAATCTGTTGGACGGAACCCGCAA GCAGAGCAAAATGTTGCTGCAGATCCAACTCTTCCCCGCACCAAGTCTGTTCGTTGTTCTCAATGCAATCATGGAGAAGC TGTCTTTTTCCAGGTTGAGTCCCGATTTTGCCTACTTACTATGGAAGGGACTAACTATTTTTATGCGTCTGAGTAGAATG TTTTGCTCTCATAAGAAATATTAATGTCACTTTGTTAAATCTCAAATGTAAAATACAAGTTATTTTCCAACACTCATCTT GCAAGTAGCCCTGCTTATATTCAAAATCTTACTGGGAGAGGGAGACTTTGAACCAAAAACAATGATATCCTAAAAAATAA TCAAATCTAGACATGCATTAAGCTCAATAAACTTTAGCTTGACAAGGAATTTCAGGATATTTGTGAGTATTTTAGAATAT CTTAGCTCATCTTTAGAATATCTTGTAAGATAATTAGAATATATTATGTGATCCATGGCTCATTTGTATTGCATTCTCTG TCTTCGCTTAAGCACCGAAAAACAGAAAAGGTGCTCATAACTCCCTTCACAAAACTTTCCTCTGGATGGAGAATTTTTCC GTTTCCAGTTGTGCACGTAAACAGGCTAAAATATTTTACATAATTATCACTGTAAATAAATAAGACCACTGGGTTAGTAT TTTGCATACATTTCTTGTATCATTATGCGCTGTATCAATCTAATTTAAAGTTATTGAGAGCCTTCTCTTTCCTTTTTCCT CCCTCTCTATCTAAACCCTATCATTTCAGTAGTTTTGAATTTTATTACTATTATTCAGCATGGTTTGTTTGGGATCCCTA GTATTGATTATCATAGTTTTTAACTTTTCATTATTCTTGGCAGATTGCTTAAATTCATAAAGTTTTCCATTTTTTATTTT TGAAAACTTTCAATCACTGAAGCAGAATATGAATATTGTCATCATATGTTCTCATAATGCAGTGTTTTACTCAATATAAG AAAAGACCTAATTATCTGTGTTAGAAGTTATTTATGTTTTATGCAAACCACTCTCTTGTTCAAATGCTAAATTTGTTCCT TAGTGAATACTTAATTTTGCTCTTAGAAGTTTTTTTATGTTTTATGCGAACCACTTTTTTGTTCAAATGCTAAATCTGTT CCTTAGTGAATACTGTACTGTGAACTTCTGTGAGCTCGGTTTAGTTATTTTCAAAGGTACTTGCTGTTTTTAAGCCATTA AACACTGGCATTATCTATCCACAGAAAAGGTAATGCTTATATGAATATATGGTGTGTGTAGGTCAAGGAAGTTTCATCGT AGCAGCATGGATCTTAAATGTTTTGTTTCCTTTTCAAGCAACTACAGTAACACTCTTTTGAATGCAATTTTAGTAAAATC TGCATATTCAGAAACCATATTTTATATTTTAGTTAGTTGGAGATGCTCTAAAATCGTTTATTGTTTGTACTATGTAGACA ACAACTAGAGGGGAAGAAGGCACCACACTCGTTTTTGTTTGCTGCAACCCAACCTGTGGCCACCGATGGAGAGACTAGGA CTTTTCATACTTTGCTAAAGTCAAGGTACATTTGTAATCAAATATCTGTGCTAGTTGCTTTCCTTTAGTTTATGGATCAT ACAAGAAGTTTGTGTTGATTTTTTCGAATTGCGGAAGATATGTATGAAAGCTAATGACTAGATTTGTAAGATATGGAAGT GTTATTAAAGTCATGTGTTATATAGACTTCAAACTTCAAAGATAGCATCGCGGGATGCATCACATCTGGAACTAAGAGTA GCACCTTAGTCAGGTACCTCTGCAGTAAGGGAGAGATGGTTATTAGGTGCGTAGCTTAGTACAGGCATCATCTTTTCATT TTGGGTACATTACCACGTTCACCCGTATGCTTCTATTGATTTGCTTTCCATAATACAGAGTAACGTCAACTTGTTATTAC TCTGTTGATAAGATTATTATTACATAATCAAGGATGTCAAATATCCCATTCTCAGAGTGGTTATCATTGGTCCTTTTGAA CAGTATTATTAATACATATGAACTGTGAAAGCCATCTATATATGGCTGGATAATGGATTGCTGATTCATTTGAAGTCGCC AAACGTGAAAGATCCATTACCATCGCCCTTTACTCTTACGTTGGAGTTGTTGGTAACACCAATTAGTTTTTGATTGTCTC CATTGAGAATTCCGACTGCCGGAGCTTGAAGAGGAAGTGGAGAATTGCGGATGGTATTTGAGCGAGGCTGAGTTGCCACA GCCCGGCTGCCATCTCCTTCATCGATCAAGTCAGCTAACCCTCGCACGAGACCTGCCATATCAAGAGAAGCAGCAAAAAA ACTATATTTGGGAGGAGTCTTTCTTGCTATGCATAATGTTGAAGAAAAACTACCTTTTTATAGATGCTAGAAGAGAATAT CACGGTAGCTGCTTGCCTCTTTTTTAATTTCTTGAAACATAGCTTGAATGCAAAGCTAATTAAGGGCATGGTTGAATACT CTTTTTAAAAGCAGTTTTCACTATTTAAAAACAAGATTGTGAGGGCTTGTTTTCTGAAATAAAAATGATTTTCAGGATTT TACAACTTGTTTTTCAGAAAAAGAAAAGAAA
CDS sequence (LotjaGi4g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCTCCATGAAATTTTGCCGCCGATGCAACAACATTCTGTACCCTAAAGAGGACACGGAGCAGAAGGTTCTCTACTA CGCTTGCCGCCACTGCAACCACCAGGAGATTGCAGATGATAACATTGTCTACAGAAATCAGATACGCCAATCTGTTGGAC GGAACCCGCAAGCAGAGCAAAATGTTGCTGCAGATCCAACTCTTCCCCGCACCAAGTCTGTTCGTTGTTCTCAATGCAAT CATGGAGAAGCTGTCTTTTTCCAGACAACAACTAGAGGGGAAGAAGGCACCACACTCGTTTTTGTTTGCTGCAACCCAAC CTGTGGCCACCGATGGAGAGACTAG
Protein sequence (LotjaGi4g1v0330000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSSMKFCRRCNNILYPKEDTEQKVLYYACRHCNHQEIADDNIVYRNQIRQSVGRNPQAEQNVAADPTLPRTKSVRCSQCN HGEAVFFQTTTRGEEGTTLVFVCCNPTCGHRWRD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Gene3D | 1 | 46 | 46 | 1.2E-22 | – | |
PANTHER | 1 | 114 | 114 | 1.2E-53 | – | |
SUPERFAMILY | 1 | 48 | 48 | 1.14E-17 | – | |
PANTHER | 1 | 114 | 114 | 1.2E-53 | – | |
Pfam | 4 | 36 | 33 | 7.4E-11 | ||
PIRSF | 4 | 114 | 111 | 3.8E-19 | ||
SMART | 5 | 58 | 54 | 1.8E-10 | ||
Gene3D | 47 | 114 | 68 | 8.2E-25 | – | |
SUPERFAMILY | 60 | 114 | 55 | 2.15E-14 | – | |
ProSiteProfiles | 72 | 113 | 42 | 11.614 | ||
SMART | 74 | 114 | 41 | 4.9E-4 | ||
Pfam | 75 | 113 | 39 | 9.6E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi4g1v0330000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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