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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR001623
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 280 results. Now displaying 1 of 6 with 50 rows per page. This search has taken 6.918s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0050619.1
n.a. Curved DNA-binding protein [Medicago truncatula] gi|357495299|ref|XP_003617938.1| chr0 17229260 17232543 -
8 domain predictions
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Lj0g3v0067729.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357498605|ref|XP_003619591.1| chr0 24087630 24088562 -
8 domain predictions
 –
Lj0g3v0077139.1
n.a. Curved DNA-binding protein [Medicago truncatula] gi|357463859|ref|XP_003602211.1| chr0 29531275 29536772 -
8 domain predictions
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Lj0g3v0084499.1
n.a. PREDICTED: chaperone protein dnaJ 10 [Vitis vinifera] gi|359474938|ref|XP_002283645.2| chr0 33629132 33631068 +
8 domain predictions
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Lj0g3v0084799.1
n.a. PREDICTED: chaperone protein dnaJ 6-like [Glycine max] gi|356500485|ref|XP_003519062.1| chr0 33829436 33832055 +
8 domain predictions
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Lj0g3v0084989.1
n.a. PREDICTED: chaperone protein DnaJ-like [Cicer arietinum] gi|502143216|ref|XP_004505262.1| chr0 33924782 33926257 -
8 domain predictions
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Lj0g3v0091839.1
n.a. PREDICTED: chaperone protein DnaJ-like isoform X2 [Cicer arietinum] gi|502143781|ref|XP_004505463.1| chr0 38083702 38091426 +
8 domain predictions
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Lj0g3v0112449.1
n.a. PREDICTED: dnaJ-like protein R260-like [Glycine max] gi|356525890|ref|XP_003531554.1| chr0 48966070 48966555 +
8 domain predictions
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Lj0g3v0115199.1
n.a. PREDICTED: chaperone protein dnaJ 10-like isoform X1 [Cicer arietinum] gi|502158031|ref|XP_004511002.1| chr0 50601244 50605638 -
8 domain predictions
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Lj0g3v0128959.1
n.a. Curved DNA-binding protein [Medicago truncatula] gi|357489993|ref|XP_003615284.1| chr0 58299471 58300399 -
8 domain predictions
 –
Lj0g3v0129039.1
n.a. PREDICTED: dnaJ homolog subfamily B member 1-like [Cicer arietinum] gi|502147355|ref|XP_004506751.1| chr0 58341057 58345031 -
8 domain predictions
 –
Lj0g3v0205899.1
n.a. PREDICTED: dnaJ homolog subfamily C member 14-like [Glycine max] gi|356555977|ref|XP_003546304.1| chr0 102512097 102517474 -
8 domain predictions
 –
Lj0g3v0211709.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357474457|ref|XP_003607513.1| chr0 106692876 106696291 +
8 domain predictions
 –
Lj0g3v0234079.1
n.a. PREDICTED: dnaJ homolog subfamily B member 14-like [Glycine max] gi|356510112|ref|XP_003523784.1| chr0 121207511 121207993 -
5 domain predictions
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Lj0g3v0258139.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357438881|ref|XP_003589717.1| chr0 134050196 134053313 +
7 domain predictions
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Lj0g3v0267619.2
n.a. PREDICTED: chaperone protein DnaJ-like [Cicer arietinum] gi|502163224|ref|XP_004512766.1| chr0 138657893 138665320 -
8 domain predictions
 –
Lj0g3v0267619.3
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356522869|ref|XP_003530065.1| chr0 138657893 138665320 -
8 domain predictions
 –
Lj0g3v0289739.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like [Glycine max] gi|356500637|ref|XP_003519138.1| chr0 150448243 150448602 +
6 domain predictions
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Lj0g3v0300619.1
n.a. PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic-like [Cicer arietinum] gi|502126194|ref|XP_004499214.1| chr0 156224875 156229119 +
2 domain predictions
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Lj0g3v0301529.1
n.a. DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp]. lyrata] gi|297823385|ref|XP_002879575.1| chr0 156740758 156745336 -
6 domain predictions
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Lj0g3v0302189.1
n.a. n.a. chr0 157171689 157172833 +
5 domain predictions
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Lj0g3v0339829.1
n.a. PREDICTED: chaperone protein dnaJ 6-like [Glycine max] gi|356572054|ref|XP_003554185.1| chr0 178046634 178049228 -
8 domain predictions
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Lj0g3v0344319.1
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356525463|ref|XP_003531344.1| chr0 180578328 180584583 -
8 domain predictions
 –
Lj0g3v0344319.2
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356525463|ref|XP_003531344.1| chr0 180578328 180584583 -
8 domain predictions
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Lj0g3v0344319.4
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356525463|ref|XP_003531344.1| chr0 180581107 180584342 -
4 domain predictions
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Lj0g3v0345979.1
n.a. PREDICTED: chaperone protein DnaJ-like [Glycine max] gi|356540271|ref|XP_003538613.1| chr0 181475514 181480895 -
8 domain predictions
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Lj1g3v0000020.1
n.a. PREDICTED: chaperone protein dnaJ 10-like [Cicer arietinum] gi|502158766|ref|XP_004511274.1| chr1 2089 15721 -
8 domain predictions
 –
Lj1g3v0213210.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357489941|ref|XP_003615258.1| chr1 2250125 2253475 +
4 domain predictions
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Lj1g3v0246820.1
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like isoform X2 [Cicer arietinum] gi|502095201|ref|XP_004490397.1| chr1 2517449 2527795 +
8 domain predictions
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Lj1g3v0246820.2
n.a. PREDICTED: chaperone protein dnaJ 1, mitochondrial-like isoform X3 [Cicer arietinum] gi|502095205|ref|XP_004490398.1| chr1 2517521 2525952 +
8 domain predictions
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Lj1g3v0450120.1
n.a. PREDICTED: dnaJ homolog subfamily B member 1-like [Glycine max] gi|356508606|ref|XP_003523046.1| chr1 6047702 6051252 +
8 domain predictions
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Lj1g3v0726920.1
n.a. Chaperone DnaJ-domain superfamily protein isoform 1 [Theobroma cacao] gi|508724229|gb|EOY16126.1| chr1 9656806 9659832 +
8 domain predictions
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Lj1g3v0874340.1
n.a. PREDICTED: auxilin-related protein 2-like [Glycine max] gi|356518565|ref|XP_003527949.1| chr1 11192498 11221971 -
3 domain predictions
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Lj1g3v0874340.3
n.a. PREDICTED: auxilin-related protein 1-like [Glycine max] gi|356507636|ref|XP_003522570.1| chr1 11216654 11220531 -
3 domain predictions
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Lj1g3v0948660.1
n.a. n.a. chr1 11944859 11950031 +
8 domain predictions
 –
Lj1g3v0948660.2
n.a. n.a. chr1 11944859 11948774 +
8 domain predictions
 –
Lj1g3v0948660.3
n.a. n.a. chr1 11944859 11950031 +
8 domain predictions
 –
Lj1g3v1265870.1
n.a. Os04g0687300 [Oryza sativa Japonica Group] gi|115461466|ref|NP_001054333.1| chr1 15196555 15202767 +
7 domain predictions
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Lj1g3v1357920.1
n.a. PREDICTED: auxilin-related protein 2-like [Glycine max] gi|356512862|ref|XP_003525134.1| chr1 16224195 16235835 +
3 domain predictions
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Lj1g3v1502580.1
n.a. Curved DNA-binding protein [Medicago truncatula] gi|357465045|ref|XP_003602804.1| chr1 17932185 17936127 +
8 domain predictions
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Lj1g3v1548940.1
n.a. PREDICTED: cysteine string protein-like [Cicer arietinum] gi|502133068|ref|XP_004501640.1| chr1 18598926 18599660 +
7 domain predictions
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Lj1g3v1560100.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357465265|ref|XP_003602914.1| chr1 18816298 18818141 -
7 domain predictions
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Lj1g3v1779020.1
n.a. Chaperone DnaJ-domain superfamily protein isoform 1 [Theobroma cacao] gi|508723743|gb|EOY15640.1| chr1 20594053 20598359 -
8 domain predictions
 –
Lj1g3v1779020.2
n.a. Chaperone DnaJ-domain superfamily protein isoform 1 [Theobroma cacao] gi|508723743|gb|EOY15640.1| chr1 20594053 20598359 -
8 domain predictions
 –
Lj1g3v1779020.3
n.a. Chaperone DnaJ-domain superfamily protein isoform 2 [Theobroma cacao] gi|508723744|gb|EOY15641.1| chr1 20594053 20618341 -
8 domain predictions
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Lj1g3v1779020.4
n.a. Chaperone DnaJ-domain superfamily protein isoform 2 [Theobroma cacao] gi|508723744|gb|EOY15641.1| chr1 20614549 20618341 -
8 domain predictions
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Lj1g3v1788160.1
n.a. DnaJ domain family [Medicago truncatula] gi|357465833|ref|XP_003603201.1| chr1 21382497 21384249 +
3 domain predictions
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Lj1g3v2326700.1
n.a. PREDICTED: dnaJ homolog subfamily B member 13-like [Solanum lycopersicum] gi|460402522|ref|XP_004246761.1| chr1 27553007 27556575 +
8 domain predictions
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Lj1g3v2372290.1
n.a. PREDICTED: dnaJ homolog subfamily C member 10-like [Glycine max] gi|356566692|ref|XP_003551564.1| chr1 27813495 27816484 +
8 domain predictions
 –
Lj1g3v3105110.1
n.a. Chaperone protein dnaJ [Medicago truncatula] gi|357512005|ref|XP_003626291.1| chr1 35358167 35360390 +
8 domain predictions
 –