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Lj1g3v2326700.1

Overview

Field Value
Gene ID Lj1g3v2326700
Transcript ID Lj1g3v2326700.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dnaJ homolog subfamily B member 13-like [Solanum lycopersicum] gi|460402522|ref|XP_004246761.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 23 23 – –
Gene3D
G3DSA:1.10.287.110
22 115 94 8.90E-37
IPR001623
PANTHER
PTHR24078
24 104 81 9.20E-215 –
PANTHER
PTHR24078:SF188
24 104 81 9.20E-215 –
SUPERFAMILY
SSF46565
26 120 95 6.28E-34
IPR001623
SMART
SM00271
26 85 60 1.30E-33
IPR001623
CDD
cd06257
27 82 56 2.00E-27
IPR001623
Pfam
PF00226
27 90 64 1.30E-28
IPR001623
ProSiteProfiles
PS50076
27 93 67 25.119
IPR001623
PRINTS
PR00625
29 47 19 5.30E-30
IPR001623
PRINTS
PR00625
47 62 16 5.30E-30
IPR001623
PRINTS
PR00625
65 85 21 5.30E-30
IPR001623
ProSitePatterns
PS00636
70 89 20 –
IPR018253
PRINTS
PR00625
85 104 20 5.30E-30
IPR001623
MobiDBLite
mobidb-lite
95 121 27 – –
PANTHER
PTHR24078
120 362 243 9.20E-215 –
PANTHER
PTHR24078:SF188
120 362 243 9.20E-215 –
CDD
cd10747
187 350 164 1.34E-50 –
Gene3D
G3DSA:2.60.260.20
188 266 79 7.80E-34 –
Pfam
PF01556
189 347 159 6.50E-43
IPR002939
SUPERFAMILY
SSF49493
189 268 80 1.96E-16
IPR008971
Gene3D
G3DSA:2.60.260.20
268 348 81 1.40E-25 –
SUPERFAMILY
SSF49493
270 356 87 1.03E-22
IPR008971

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj1g3v2326700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v2326700.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.