Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0128959.1

Overview

Field Value
Gene ID Lj0g3v0128959
Transcript ID Lj0g3v0128959.1
Lotus japonicus genome version MG20 v3.0
Description Curved DNA-binding protein [Medicago truncatula] gi|357489993|ref|XP_003615284.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24078
11 159 149 9.50E-123 –
PANTHER
PTHR24078:SF259
11 159 149 9.50E-123 –
SUPERFAMILY
SSF46565
62 134 73 9.03E-19
IPR001623
Gene3D
G3DSA:1.10.287.110
66 132 67 3.00E-17
IPR001623
SMART
SM00271
68 126 59 4.40E-20
IPR001623
CDD
cd06257
69 123 55 3.23E-17
IPR001623
Pfam
PF00226
69 131 63 2.00E-18
IPR001623
ProSiteProfiles
PS50076
69 134 66 15.869
IPR001623
PRINTS
PR00625
71 89 19 5.00E-08
IPR001623
PRINTS
PR00625
90 105 16 5.00E-08
IPR001623
PRINTS
PR00625
106 126 21 5.00E-08
IPR001623
ProSitePatterns
PS00636
111 130 20 –
IPR018253
MobiDBLite
mobidb-lite
153 194 42 – –
PANTHER
PTHR24078:SF259
182 249 68 9.50E-123 –
PANTHER
PTHR24078
182 249 68 9.50E-123 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj0g3v0128959.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0128959.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.