Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002480
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.586s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0105319.1
n.a. PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Fragaria vesca subsp]. vesca] gi|470127404|ref|XP_004299659.1| chr0 45160668 45164022 -
4 domain predictions
2 GO terms
Lj1g3v0261660.1
n.a. PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Glycine max] gi|356500707|ref|XP_003519173.1| chr1 2747877 2748109 -
3 domain predictions
2 GO terms
Lj1g3v0261750.1
n.a. 3-deoxy-7-phosphoheptulonate synthase [Lactuca sativa] gi|73912412|dbj|BAE20405.1| chr1 2749393 2749596 -
3 domain predictions
2 GO terms
Lj1g3v0261770.1
n.a. 2-dehydro-3-deoxyphosphoheptonate aldolase (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) [Medicago truncatula] gi|357489731|ref|XP_003615153.1| chr1 2749611 2750704 -
3 domain predictions
2 GO terms
Lj1g3v0263110.1
n.a. PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic-like [Cicer arietinum] gi|502177864|ref|XP_004516132.1| chr1 2781136 2785582 +
4 domain predictions
2 GO terms
Lj1g3v0263120.1
n.a. n.a. chr1 2781806 2786631 -
3 domain predictions
2 GO terms
Lj6g3v2204800.1
n.a. PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Glycine max] gi|356554708|ref|XP_003545685.1| chr6 25525988 25529581 +
4 domain predictions
2 GO terms
Lj6g3v2204810.1
n.a. PREDICTED: phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic-like [Glycine max] gi|356554708|ref|XP_003545685.1| chr6 25528395 25530190 +
3 domain predictions
2 GO terms
LotjaGi1g1v0143000.1
n.a. Phospho-2-dehydro-3-deoxyheptonate aldolase; TAIR: AT1G22410.1 Class-II DAHP synthetase family protein; Swiss-Prot: sp|P27608|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; TrEMBL-Plants: tr|I1JGU8|I1JGU8_SOYBN Phospho-2-dehydro-3-deoxyheptonate aldolase; Found in the gene: LotjaGi1g1v0143000 LjG1.1_chr1 23671362 23676484 -
4 domain predictions
2 GO terms
LotjaGi1g1v0143000.2
n.a. Phospho-2-dehydro-3-deoxyheptonate aldolase; TAIR: AT1G22410.1 Class-II DAHP synthetase family protein; Swiss-Prot: sp|P27608|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; TrEMBL-Plants: tr|I1JGU8|I1JGU8_SOYBN Phospho-2-dehydro-3-deoxyheptonate aldolase; Found in the gene: LotjaGi1g1v0143000 LjG1.1_chr1 23672141 23676028 -
4 domain predictions
2 GO terms
LotjaGi1g1v0239000.1
n.a. Phospho-2-dehydro-3-deoxyheptonate aldolase; TAIR: AT1G22410.1 Class-II DAHP synthetase family protein; Swiss-Prot: sp|P27608|AROF_TOBAC Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplastic; TrEMBL-Plants: tr|A0A1J7HUV8|A0A1J7HUV8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0239000 LjG1.1_chr1 56872743 56876204 -
4 domain predictions
2 GO terms
LotjaGi6g1v0351200.1
n.a. Phospho-2-dehydro-3-deoxyheptonate aldolase; TAIR: AT4G33510.1 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase; Swiss-Prot: sp|Q00218|AROG_ARATH Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic; TrEMBL-Plants: tr|A0A151T7J8|A0A151T7J8_CAJCA Phospho-2-dehydro-3-deoxyheptonate aldolase; Found in the gene: LotjaGi6g1v0351200 LjG1.1_chr6 66317312 66321647 +
4 domain predictions
2 GO terms