Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004252
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

Export options

Download the entire search result as a CSV file.

We have found 103 results. Now displaying 1 of 3 with 50 rows per page. This search has taken 0.036s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0077579.1
n.a. Os05g0202500 [Oryza sativa Japonica Group] gi|115462569|ref|NP_001054884.1| chr0 29768866 29773094 +
2 domain predictions
 –
Lj0g3v0181809.1
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 88754659 88755926 -
2 domain predictions
 –
Lj0g3v0205799.2
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357468991|ref|XP_003604780.1| chr0 102445643 102449750 +
2 domain predictions
 –
Lj0g3v0205799.3
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357468991|ref|XP_003604780.1| chr0 102445643 102449750 +
2 domain predictions
 –
Lj0g3v0205799.4
n.a. TdcA1-ORF1-ORF2 protein [Medicago truncatula] gi|357468991|ref|XP_003604780.1| chr0 102448507 102449750 +
2 domain predictions
 –
Lj0g3v0222369.1
n.a. TdcA1-ORF2 protein [Medicago truncatula] gi|357453469|ref|XP_003597012.1| chr0 114384695 114392179 +
2 domain predictions
 –
Lj0g3v0222379.1
n.a. TdcA1-ORF2 protein [Medicago truncatula] gi|357453469|ref|XP_003597012.1| chr0 114394263 114401562 +
2 domain predictions
 –
Lj0g3v0261539.1
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 135525486 135527475 -
2 domain predictions
 –
Lj0g3v0261539.2
n.a. 6b-interacting protein 2 [Nicotiana tabacum] gi|169264928|dbj|BAG12304.1| chr0 135526329 135527472 -
2 domain predictions
 –
Lj0g3v0289679.1
n.a. Ubiquitin [Medicago truncatula] gi|124359456|gb|ABN05900.1| chr0 150422514 150424826 -
2 domain predictions
 –
Lj0g3v0289679.2
n.a. Ubiquitin [Medicago truncatula] gi|124359456|gb|ABN05900.1| chr0 150422514 150428449 -
2 domain predictions
 –
Lj0g3v0303389.2
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr0 157898155 157903752 +
2 domain predictions
 –
Lj3g3v0718510.1
n.a. PttB [Medicago truncatula] gi|357486205|ref|XP_003613390.1| chr3 7886811 7890695 -
2 domain predictions
 –
Lj4g3v2644190.1
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
 –
Lj4g3v2644190.2
n.a. ATP synthase subunit-like protein [Medicago truncatula] gi|357519249|ref|XP_003629913.1| chr4 36001097 36007317 -
2 domain predictions
 –
Lj4g3v3017370.2
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr4 40492204 40496229 +
2 domain predictions
 –
Lj6g3v0635190.3
n.a. HGWP repeat containing protein-like protein [Medicago truncatula] gi|357487581|ref|XP_003614078.1| chr6 6214273 6215750 -
2 domain predictions
 –
LotjaGi1g1v0034500.1
n.a. En/Spm-like transposon protein; TAIR: AT1G27440.1 Exostosin family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0034500 LjG1.1_chr1 4575786 4577149 -
2 domain predictions
 –
LotjaGi1g1v0085000.1
n.a. ATP synthase epsilon chain, chloroplastic; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q06SF3|ATPE_STIHE ATP synthase epsilon chain, chloroplastic; TrEMBL-Plants: tr|I3SJY9|I3SJY9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0085000 LjG1.1_chr1 12260043 12263965 +
2 domain predictions
 –
LotjaGi1g1v0214800_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310434 47316061 -
2 domain predictions
 –
LotjaGi1g1v0214800_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310434 47316061 -
2 domain predictions
 –
LotjaGi1g1v0214800_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310434 47316061 -
2 domain predictions
 –
LotjaGi1g1v0214800_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class, expressed; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7UJ86|PYRG_RHOBA CTP synthase; TrEMBL-Plants: tr|A0A151QLA5|A0A151QLA5_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0214800_LC LjG1.1_chr1 47310889 47316039 -
2 domain predictions
 –
LotjaGi1g1v0286600_LC.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q7Z202|CUPC_DICDI Calcium up-regulated protein C; TrEMBL-Plants: tr|I3SL59|I3SL59_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0286600_LC LjG1.1_chr1 69525748 69528042 -
2 domain predictions
 –
LotjaGi1g1v0297100.1
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956391 71965239 +
2 domain predictions
 –
LotjaGi1g1v0297100.2
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956506 71965013 +
2 domain predictions
 –
LotjaGi1g1v0297100.3
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956521 71965008 +
2 domain predictions
 –
LotjaGi1g1v0297100.4
n.a. En/Spm-like transposon protein; TAIR: AT4G10840.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|K7LAA6|K7LAA6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0297100 LjG1.1_chr1 71956557 71965002 +
2 domain predictions
 –
LotjaGi1g1v0501700.1
n.a. En/Spm-like transposon protein; TAIR: AT3G62260.2 Protein phosphatase 2C family protein; Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0501700 LjG1.1_chr1 101841161 101845054 -
2 domain predictions
 –
LotjaGi1g1v0526000.1
n.a. En/Spm-like transposon protein; TAIR: AT3G30200.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0526000 LjG1.1_chr1 105279499 105284457 -
2 domain predictions
 –
LotjaGi1g1v0526000.2
n.a. En/Spm-like transposon protein; TAIR: AT3G30200.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0526000 LjG1.1_chr1 105279625 105282625 -
2 domain predictions
 –
LotjaGi1g1v0526000.3
n.a. En/Spm-like transposon protein; TAIR: AT3G30200.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9XEC1|Y4443_ARATH Probable transposase-like protein At4g04430; TrEMBL-Plants: tr|I3SWI3|I3SWI3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0526000 LjG1.1_chr1 105279672 105283315 -
2 domain predictions
 –
LotjaGi1g1v0577600_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q711Q0|CJ071_HUMAN Uncharacterized protein C10orf71; TrEMBL-Plants: tr|V7C1B5|V7C1B5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0577600_LC LjG1.1_chr1 111702873 111715419 +
2 domain predictions
 –
LotjaGi1g1v0682300.1
n.a. En/Spm transposon protein-like; TAIR: AT2G24530.1 transcriptional regulator of RNA polII, SAGA, subunit; Swiss-Prot: sp|Q5UPB5|YL035_MIMIV Putative BTB/POZ domain-containing protein L35; TrEMBL-Plants: tr|I3T6I6|I3T6I6_MEDTR Uncharacterized protein; Found in the gene: LotjaGi1g1v0682300 LjG1.1_chr1 124968294 124970370 -
2 domain predictions
 –
LotjaGi2g1v0013200_LC.1
n.a. En/Spm transposon protein-like; TAIR: AT1G21440.1 Phosphoenolpyruvate carboxylase family protein; Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|V7D0K6|V7D0K6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0013200_LC LjG1.1_chr2 4792679 4799999 -
2 domain predictions
 –
LotjaGi2g1v0054600_LC.1
n.a. Transmembrane-like protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q5ZLH4|TM230_CHICK Transmembrane protein 230; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0054600_LC LjG1.1_chr2 10829886 10834591 -
2 domain predictions
 –
LotjaGi2g1v0108300.1
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q8Y5X8|HIS8_LISMO Histidinol-phosphate aminotransferase; TrEMBL-Plants: tr|A2Q1T1|A2Q1T1_MEDTR Ubiquitin; Found in the gene: LotjaGi2g1v0108300 LjG1.1_chr2 37258722 37262590 -
2 domain predictions
 –
LotjaGi2g1v0142100_LC.1
n.a. Guanine nucleotide-binding protein subunit beta-like protein; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9FLX6|PP430_ARATH Pentatricopeptide repeat-containing protein At5g52850, chloroplastic; TrEMBL-Plants: tr|B1B5X5|B1B5X5_TOBAC 6b-interacting protein 2; Found in the gene: LotjaGi2g1v0142100_LC LjG1.1_chr2 51743413 51748552 -
2 domain predictions
 –
LotjaGi2g1v0154100_LC.1
n.a. 3-dehydroquinate synthase; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|Q96Y96|AROB_SULTO 3-dehydroquinate synthase; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0154100_LC LjG1.1_chr2 55162777 55166707 -
2 domain predictions
 –
LotjaGi2g1v0154100_LC.2
n.a. tRNA modification GTPase MnmE; TAIR: AT1G42700.1 hypothetical protein; Swiss-Prot: sp|P0A4Z5|AROB_MYCBO 3-dehydroquinate synthase; TrEMBL-Plants: tr|K7KDP3|K7KDP3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0154100_LC LjG1.1_chr2 55162777 55166707 -
2 domain predictions
 –
LotjaGi2g1v0207700_LC.1
n.a. En/Spm-like transposon protein, putative; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P46620|NU5C_MAIZE NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic; TrEMBL-Plants: tr|V7C5U2|V7C5U2_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0207700_LC LjG1.1_chr2 65284633 65285173 -
2 domain predictions
 –
LotjaGi2g1v0222900_LC.1
n.a. En/Spm-like transposon protein; TAIR: AT2G45720.1 ARM repeat superfamily protein; Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A0B2S4F6|A0A0B2S4F6_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0222900_LC LjG1.1_chr2 67893408 67898038 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.1
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452961 88460250 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.2
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452961 88460250 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.3
n.a. Plant transposase (Ptta/En/Spm family); TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.4
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.5
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.6
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|P15268|MOSA_MAIZE Autonomous transposable element EN-1 mosaic protein; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88452978 88468702 +
2 domain predictions
 –
LotjaGi2g1v0388300_LC.7
n.a. Transposon protein, putative, CACTA, En/Spm sub-class; TAIR: AT1G40087.1 Plant transposase (Ptta/En/Spm family); Swiss-Prot: sp|Q9YBA2|GCST_AERPE Probable aminomethyltransferase; TrEMBL-Plants: tr|A0A1J7GRV6|A0A1J7GRV6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0388300_LC LjG1.1_chr2 88453057 88460224 +
2 domain predictions
 –
LotjaGi3g1v0050700_LC.1
n.a. En/Spm-like transposon protein; TAIR: AT1G60110.1 Mannose-binding lectin superfamily protein; Swiss-Prot: sp|Q5U2M8|MDC1_RAT Mediator of DNA damage checkpoint protein 1; TrEMBL-Plants: tr|V7CCP3|V7CCP3_PHAVU Uncharacterized protein; Found in the gene: LotjaGi3g1v0050700_LC LjG1.1_chr3 5281300 5288100 -
2 domain predictions
 –