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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR004854
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.942s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v0764450.1
n.a. CM0545.430.nc [Lotus japonicus] gi|164605542|dbj|BAF98608.1| chr1 9893519 9893850 -
2 domain predictions
1 GO term
Lj2g3v2904810.1
n.a. CM0545.430.nc [Lotus japonicus] gi|164605542|dbj|BAF98608.1| chr2 37939772 37943402 +
3 domain predictions
1 GO term
Lj2g3v3245780.1
n.a. Ubiquitin fusion degradation protein-like protein [Medicago truncatula] gi|357472787|ref|XP_003606678.1| chr2 41516691 41517905 -
3 domain predictions
1 GO term
Lj3g3v3213200.1
n.a. Ubiquitin fusion degradation protein-like protein [Medicago truncatula] gi|357472787|ref|XP_003606678.1| chr3 39632228 39633442 +
3 domain predictions
1 GO term
Lj4g3v3113070.1
n.a. Ubiquitin fusion degradation protein [Medicago truncatula] gi|357521303|ref|XP_003630940.1| chr4 41545752 41549211 +
3 domain predictions
1 GO term
Lj6g3v1211480.1
n.a. PREDICTED: ubiquitin fusion degradation protein 1 homolog [Cicer arietinum] gi|502148487|ref|XP_004507181.1| chr6 14992223 14993458 -
3 domain predictions
1 GO term
LotjaGi1g1v0062200.1
n.a. Ubiquitin fusion degradation protein 1 like; TAIR: AT4G15420.2 Ubiquitin fusion degradation UFD1 family protein; Swiss-Prot: sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|B0BLB9|B0BLB9_LOTJA CM0545.430.nc protein; Found in the gene: LotjaGi1g1v0062200 LjG1.1_chr1 8670647 8675031 -
3 domain predictions
1 GO term
LotjaGi1g1v0062200.2
n.a. Ubiquitin fusion degradation protein 1 like; TAIR: AT4G15420.2 Ubiquitin fusion degradation UFD1 family protein; Swiss-Prot: sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|B0BLB9|B0BLB9_LOTJA CM0545.430.nc protein; Found in the gene: LotjaGi1g1v0062200 LjG1.1_chr1 8671207 8674871 -
3 domain predictions
1 GO term
LotjaGi2g1v0375600.1
n.a. Ubiquitin fusion degradation protein 1 like; TAIR: AT2G29070.1 Ubiquitin fusion degradation UFD1 family protein; Swiss-Prot: sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|A0A1J7H776|A0A1J7H776_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375600 LjG1.1_chr2 87294124 87299144 +
3 domain predictions
1 GO term
LotjaGi4g1v0456800.1
n.a. Ubiquitin fusion degradation 1 protein; TAIR: AT2G21270.1 ubiquitin fusion degradation 1; Swiss-Prot: sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|G7LAK8|G7LAK8_MEDTR Ubiquitin fusion degradation 1 protein; Found in the gene: LotjaGi4g1v0456800 LjG1.1_chr4 82815839 82819957 +
3 domain predictions
1 GO term
LotjaGi4g1v0456800.2
n.a. Ubiquitin fusion degradation 1 protein; TAIR: AT2G21270.1 ubiquitin fusion degradation 1; Swiss-Prot: sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|G7LAK8|G7LAK8_MEDTR Ubiquitin fusion degradation 1 protein; Found in the gene: LotjaGi4g1v0456800 LjG1.1_chr4 82816228 82819049 +
3 domain predictions
1 GO term
LotjaGi4g1v0456800.3
n.a. Ubiquitin fusion degradation 1 protein; TAIR: AT2G21270.1 ubiquitin fusion degradation 1; Swiss-Prot: sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|G7LAK8|G7LAK8_MEDTR Ubiquitin fusion degradation 1 protein; Found in the gene: LotjaGi4g1v0456800 LjG1.1_chr4 82816346 82819049 +
3 domain predictions
1 GO term
LotjaGi4g1v0456800.4
n.a. Ubiquitin fusion degradation 1 protein; TAIR: AT2G21270.1 ubiquitin fusion degradation 1; Swiss-Prot: sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|G7LAK8|G7LAK8_MEDTR Ubiquitin fusion degradation 1 protein; Found in the gene: LotjaGi4g1v0456800 LjG1.1_chr4 82816402 82819049 +
3 domain predictions
1 GO term
LotjaGi4g1v0456800.5
n.a. Ubiquitin fusion degradation 1 protein; TAIR: AT2G21270.1 ubiquitin fusion degradation 1; Swiss-Prot: sp|P70362|UFD1_MOUSE Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|G7LAK8|G7LAK8_MEDTR Ubiquitin fusion degradation 1 protein; Found in the gene: LotjaGi4g1v0456800 LjG1.1_chr4 82816918 82819049 +
3 domain predictions
1 GO term
LotjaGi6g1v0227500.1
n.a. Ubiquitin fusion degradation 1 protein; TAIR: AT2G29070.2 Ubiquitin fusion degradation UFD1 family protein; Swiss-Prot: sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|A0A1J7H776|A0A1J7H776_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0227500 LjG1.1_chr6 53369520 53370924 -
3 domain predictions
1 GO term