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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0375600 |
| Transcript ID | LotjaGi2g1v0375600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin fusion degradation protein 1 like; TAIR: AT2G29070.1 Ubiquitin fusion degradation UFD1 family protein; Swiss-Prot: sp|Q92890|UFD1_HUMAN Ubiquitin fusion degradation protein 1 homolog; TrEMBL-Plants: tr|A0A1J7H776|A0A1J7H776_LUPAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0375600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:87294124..87299144) extracted from Lotus japonicus Gifu genome v1.2.
AATGATAAAAACTCATTGGACGGTCAACCCCTACAGCTTAGTGTTTTAACCTTAATGTGAAAGATTAGCAAGGCAAAACA AGATTAGGATTCTTTCATCTCACGAAATTTTATATTTATCTGTCTCTATATAAATATTTGTATGACCCCACTTATTTCAT ACATGTTAAGCGAGGGATTAGCAGAAATTTCAACATGATAATGTAATGTAAAATTGACCCATCTTATTTATATATTGATT TCTTGAACCTTCATTCCAACCTCTAACTAGTTTTGAATTATGATATTTTGTAGGCAAATCTGGAAAACGGTGATAAAAGT ATGTGTACCAACAGCTTACATTTTAGTCTTTGATGTGAAATTTTTGATAGCTTTTTATGCCTATGTAGTTTGCTAATGAA AATTCTTTTTCCCTCCAGTTATCATGCCCCCTTCTGCCTTATATCAACTTGGTAATAATTCTATATATTTGTCTAACTTC ATCTTTTTTATTCTTTTTTCCCTCCTGCTAAATATGTAAATTCATGTGAAAACCTTCCAGTAAATTTGCACATGGAATAC CCTATGTTATTTGAACTGAGGAATCCTTCTGCTGAAAAAGTCACTCACTGTGGGGTCCTAGAATTCACTGCTGATGAGGG AATGATATGCATACCAAACTGGGTATGACATTTTTCCTTCTGTTTATGTTTCTTTCTTTTACTTAGTGCTGGATACACGG TAGATTTTCACGATTGAAGGAGAACTGATTCCGGGAGAAGTGTTTTACTGACTCCTAGTAGCTTCTGTGGTAGCACAACT GATTCGGGAAGATCTGAACTTGAATCCAAACATGCTATTAATAGATTAGACATTTTTCCTTACAACTTCTGATTGTGATT GTTAGATGATGGAAAATATGCACCTAAAAGAGGGAGACACTGTGAATATGAGAAGTGCCAGCCTTGTAAAAGGAAACTTT GTGAAGCTGCAGCCTCACACCAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATGTATGGATTTAGATACCACATCTA TTTCAACCTTTAATTTCTTAAATCTTGTAACTGTTTCTATGAATACTTTCTTAATTCTTCCTTTTGGTCATTGGTCATTT TGCAGGCTAGAGACTTCATTGAGGAACTACTCATGTTTAACAACTGGTGACACTATAATGATTGCTTACAACAACAAGAA GTATTACATTGATGTGGTTGAAACTAAACCCTCCCCTGCAGTCAGCATAATTGAAACAGACTGTGAAGTTGATTTTGCAC AACCTCTTGACTATGAAGAACCAGAGAAACAGTTGCCACCTGCTGAGCTAGAAGGTTGTGATTCTTTTATCTTCTGTTGT CTACTTTAAGCATTTTTTGTGTTTTCTAGTATAATAGCATGTTTGGTTTAAAGGTTTGCTATAGATTCTAGAATCACTTC TCGTTAGAAGTTACAAGTCTAGAGTCTTAGCTTATGAGTAAATGTGGAATTATCTTATGGAATATGCTTTTAGCATTTTT GCTTTTTCTAGTATATTAGCATGTTTGTCTCAGTGTGAAATGTTCTATAATCACTTTTGGTTAGAAGTTACAAGTCTCAG CTTCTGAGTGATTGTCTTTAATACTGTGCTTATCATGAAACCATACATGCACTAAAGTTCATTGGAAGATTTTGACTATA ATTCTATGCATTTCAGATGAAGATGTGCCGGCAGCAAAGAAATCTCGAATCATCCCATTCAGTGGTTCTGCAAGACGTTT GGATGGCAAACCCTCAACACAATCAGTTGAACAAACTCCCTCTTCAACGCTAAAGCAGCAGCAACAGACTGCAAATGCAA TCAAGAGTTCCAATAGAGCTTCTGGAAAGCTTGTATTTGGATCAAATGCAAATACACCCAAGACTCAAACACAGCCAAAG GTGAGTTTTGTCTATAATCTCTGTGTTACAATAGAGAATTACCTTAAAACTATGGTTTATTGACATGAATTGCCAAATTT CTCTTAACAGGCTTCTCTGGAAAGCACAAGTCAAGAGTCACCTCAGAAGGTAGAAGAACCAAAATTCCAAGCTTTCTCAG GAAAGAAGTACACATTAAGTTAATCCTTGTTAGGCTGCTTAACACTGGATCGTAGAATTTCACATTTCCGAAATTATTTA TATCATAAAAATATCCTAACACAAATCACTTTTCTTTCTACTCATCATAATTAATTTTATCAAAATCAATTCTTACAATG TTAATCCAAACATTTATGACTTAACTGTCATTAAAATTAAAAATATACCTTAATTTTTAAGGGGAAGTCATTTACTTGAA TGCTCATCCTTGTGAATGGAGAGAAACGTATCTGGTAGTAGATTTTGTGTATCCATACTAAGTAATATTTTGAGACACTT AACCGCATCGATGAGGAAATTTAACCGCACTTTGAATTATTAACAACTAAAGATGAATACAGATCTTGAATTGCTTTCAA GCTATGGTACATTGTTATTTTTGAGAAAAACAAAATTAAATTAAGATTCTTATCTAAACATATCAAATTTAAATAACAAT TACATTAATTAGGTGCCAACACAATACAAAACACCAACAACAATTCTGAAGGGTTAAACCTCTAAGCTATGCTTCCACTG TTGTTTCAACTGCAACTTTATACTTGACAATTTCACGCTTCTCATCAACCTCCCATAGCTCTGGAAATGCCTCCCTGATA TTATGGATACTCTCTAATGCATGATCCACTCCAGTACTACGAACAGATGTACCCACCTGCATCCATGTAGGGGTTCACAT TTAAAACACATTGTATTGTATCGAAATGATTTTATTTTGATTGTGATGATGTATTCAGATAATCACATCAAAAGTGTATT CTATTACGTTATATGCACTGAAGGAAAAACAAAATTACAGACAAACTTTACAATGTTCATTTTTTCTTTTTCTTCACTCT CCCCCTCTCTTTAACTCAAATCCCTCAAAGCTAATTAAGAGTTCCAAATTCCAATGTAAAAATAAGAAGACTTGAACTTA TCAGTAACAAATAACAGTACATACCGCGACTGTGTGGAGGCCCAAGCGCTTGGCTGTCTGTAAATTGCGGATACTGTCCT CAAAGAACAACTGAGAAGAGCAAAAACAAATGAAGTCAATAAATATTGGTATTGTCAGTTGTCACAAAAGAATTTCTGAA GATTAGAAGGGAAAGTGGAAATTTTAGACTGAAGAGCCAAATAGTGAAAATGCAAACAATAAGGACAACTACAAGGTTTC CCTTTCTGTGGAAGATATCAGCAGTCATTAGTTGTTCATGTTCAAATTACCATAGGAAGGTTGTGAATTTAAAAAGTGTA TACCCAAATTTGAGACAAAAGAAAGAAGCTAAACAACTAATGGGAGAGGTATCTATGCTCTTACTGTTCTCTGAGGGTCA ATGTCAGCCAACTGGAAAGCCTTTTCAAATGCATCTTCAAAGGGTTTACAGACAACTGGTGTCCTAGGAAGCACCTTATC ATAATCAGTCCCTCTCGTGTACTCGCAAAAATCAAAAATTTCTGCAGTGACTGGTTTCATTTCACTGCAATCTTTGCCAT CATTCGGAGTGATGTTGTTGAAGGAATTCAGAGTGTCAAAGCTTATAATTCTTTCAAAGCAGTCCTCCAGTCCAAGGCTT CGAAGCGCTCTCACTGCATGAGCAGTGTCTGCATTGGTAAAAATCTGAAAAGGGAAACAAAGAATGAACATATATCAATA TACCATACATACATAATATCAATATAGAGACTTGCCCTCCAACCAGATACTGACCCTTTAAAAAGTAACAAAAAACTTAC AATTTTTCTAACAGGAAGGCTTAGCAAAATGCCCCTGAGAACATGATCCGGCTTCAGTAGACTTTTATACGGCAACCTCC CATGAACAGAACTGTTCAACAGAACAAAAAAAAAGAGTTTAAGATTTCCATATCAAGTAGTTTCAACTTGAACAAGATGA ATGGCCAAATAGAAAAATGTACAAACAATTATGTAAAGACAAGTTACCTATGAAAGTCATCATAGTCAATGTCATAACCA ATTGCCTGGGGACAAGAGAGAAAAGTGTTCCGGTTCGTTAATCATCATCATCTTTGCACAAAGAAATAGTTGTTAGCATA ATTCAGTGAAAAATGAAATGAACAATACCCTTAGACCAGCCATTGTTGTCCCATAGGTCTTGTATAATGAAAAGTTCAAT TCGGAAACTTTAGCAGGCTCTACCCCAAGTTTTTGAAGCATGTACTCTGATGATGACAAGAATAACAACAACTTTAGGCT ATAATTCAGTACTACCAATTACTTTTATACACATCTAAGTCCTCGTCATATATATGGAAGATACTAGTGCGGGTGAATAC ATTACCTTGAATATTTTTTGCTATCTGCGCTGATATTCCAGAACTCAAGGGATAAAGGGTATCATCGAGATCTGAAATTA TGAAAAACAAGTTAAACATAAACAATGATTATGCAAGTGAAAAGAGAAAAAATAGAACTTAGTGTGAATGATTACGTACC AAATAAAAGACAATCATATTTTGGGTTTGAAACTTGCCCGTTTTCCATTGCAACTCGAGCTTTGTAGGCTAGATTGGAAA AGTAAAAATGTTAATAATAAACCTCTAAACACAGCAAACATCAATTGAAGCCAAGATTGGAAATGCACAAACCAAGACAT TGCAGAAAGATAATTTGTAAGCAGAGGAGAATGAGAGAATCAGAAGTGAGAGATGGGTCATCGAGAAGCAAGAGAGAAGA AGAATGACAACTTACTACTGTATGTGGTGAGCGAAAGCGAAAGCGAAAGCGAGAGAGAAAGATGAAGATTGAAGATCACA GAACAGAGAATGGAGAATATAGAGGGAAGAGACCAGTTTAAATAGAACAAGAACAAGAGAACGTTGAACAACGGAATAGA GAATCGCGTTCGTATTTTGTTATCACGCAGACGCGACTTCTCAGACTCTGTTCTGTGACAT
CDS sequence (LotjaGi2g1v0375600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCCCCTTCTGCCTTATATCAACTTGTAAATTTGCACATGGAATACCCTATGTTATTTGAACTGAGGAATCCTTCTGC TGAAAAAGTCACTCACTGTGGGGTCCTAGAATTCACTGCTGATGAGGGAATGATATGCATACCAAACTGGATGATGGAAA ATATGCACCTAAAAGAGGGAGACACTGTGAATATGAGAAGTGCCAGCCTTGTAAAAGGAAACTTTGTGAAGCTGCAGCCT CACACCAAGGATTTTTTGGATATCTCCAATCCAAAAGCCATGCTAGAGACTTCATTGAGGAACTACTCATGTTTAACAAC TGGTGACACTATAATGATTGCTTACAACAACAAGAAGTATTACATTGATGTGGTTGAAACTAAACCCTCCCCTGCAGTCA GCATAATTGAAACAGACTGTGAAGTTGATTTTGCACAACCTCTTGACTATGAAGAACCAGAGAAACAGTTGCCACCTGCT GAGCTAGAAGATGAAGATGTGCCGGCAGCAAAGAAATCTCGAATCATCCCATTCAGTGGTTCTGCAAGACGTTTGGATGG CAAACCCTCAACACAATCAGTTGAACAAACTCCCTCTTCAACGCTAAAGCAGCAGCAACAGACTGCAAATGCAATCAAGA GTTCCAATAGAGCTTCTGGAAAGCTTGTATTTGGATCAAATGCAAATACACCCAAGACTCAAACACAGCCAAAGGCTTCT CTGGAAAGCACAAGTCAAGAGTCACCTCAGAAGGTAGAAGAACCAAAATTCCAAGCTTTCTCAGGAAAGAAGTACACATT AAGTTAA
Protein sequence (LotjaGi2g1v0375600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPPSALYQLVNLHMEYPMLFELRNPSAEKVTHCGVLEFTADEGMICIPNWMMENMHLKEGDTVNMRSASLVKGNFVKLQP HTKDFLDISNPKAMLETSLRNYSCLTTGDTIMIAYNNKKYYIDVVETKPSPAVSIIETDCEVDFAQPLDYEEPEKQLPPA ELEDEDVPAAKKSRIIPFSGSARRLDGKPSTQSVEQTPSSTLKQQQQTANAIKSSNRASGKLVFGSNANTPKTQTQPKAS LESTSQESPQKVEEPKFQAFSGKKYTLS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 267 | 267 | 2.3E-131 | – | |
| PANTHER | 1 | 267 | 267 | 2.3E-131 | ||
| Pfam | 1 | 147 | 147 | 6.7E-68 | ||
| Gene3D | 1 | 71 | 71 | 8.0E-30 | ||
| Gene3D | 72 | 145 | 74 | 2.6E-37 | – | |
| MobiDBLite | 153 | 268 | 116 | - | – | |
| MobiDBLite | 153 | 171 | 19 | - | – | |
| MobiDBLite | 185 | 252 | 68 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Ubiquitin-dependent protein catabolic process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. |
Expression pattern of LotjaGi2g1v0375600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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