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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR006032
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 19 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.001s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0085319.1
n.a. PREDICTED: 40S ribosomal protein S23-like [Cicer arietinum] gi|502121856|ref|XP_004497466.1| chr0 34129825 34131161 +
5 domain predictions
3 GO terms
Lj1g3v4579100.1
n.a. PREDICTED: 40S ribosomal protein S23-like [Cicer arietinum] gi|502121856|ref|XP_004497466.1| chr1 54473541 54475257 -
5 domain predictions
3 GO terms
Lj3g3v2310040.1
n.a. PREDICTED: 40S ribosomal protein S23-like [Cicer arietinum] gi|502121856|ref|XP_004497466.1| chr3 28156799 28158978 +
5 domain predictions
3 GO terms
Lj5g3v0278010.1
n.a. ribosomal protein S12 (mitochondrion) [Glycine max] gi|476507678|ref|YP_007516865.1| chr5 2267403 2267685 -
4 domain predictions
3 GO terms
Lj5g3v0616380.1
n.a. PREDICTED: 40S ribosomal protein S23-like [Cicer arietinum] gi|502121856|ref|XP_004497466.1| chr5 8254229 8255807 -
5 domain predictions
3 GO terms
LotjaGi1g1v0693700.1
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0693700 LjG1.1_chr1 126125800 126127925 +
5 domain predictions
3 GO terms
LotjaGi1g1v0693700.2
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0693700 LjG1.1_chr1 126126632 126127549 +
5 domain predictions
3 GO terms
LotjaGi1g1v0693700.3
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0693700 LjG1.1_chr1 126126652 126127549 +
5 domain predictions
3 GO terms
LotjaGi1g1v0693700.4
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0693700 LjG1.1_chr1 126126834 126127549 +
4 domain predictions
3 GO terms
LotjaGi1g1v0693700.5
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0693700 LjG1.1_chr1 126126885 126127549 +
5 domain predictions
3 GO terms
LotjaGi2g1v0364200.1
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|V7CX13|V7CX13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0364200 LjG1.1_chr2 86172423 86174912 +
5 domain predictions
3 GO terms
LotjaGi2g1v0364200.2
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|V7CX13|V7CX13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0364200 LjG1.1_chr2 86173652 86174496 +
5 domain predictions
3 GO terms
LotjaGi2g1v0364200.3
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|V7CX13|V7CX13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0364200 LjG1.1_chr2 86173792 86174496 +
4 domain predictions
3 GO terms
LotjaGi2g1v0364200.4
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|V7CX13|V7CX13_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0364200 LjG1.1_chr2 86173842 86174496 +
5 domain predictions
3 GO terms
LotjaGi5g1v0075100.1
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075100 LjG1.1_chr5 12416530 12418742 -
5 domain predictions
3 GO terms
LotjaGi5g1v0075100.2
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075100 LjG1.1_chr5 12417102 12417781 -
5 domain predictions
3 GO terms
LotjaGi5g1v0075100.3
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075100 LjG1.1_chr5 12417102 12417934 -
5 domain predictions
3 GO terms
LotjaGi5g1v0075100.4
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075100 LjG1.1_chr5 12417102 12418030 -
5 domain predictions
3 GO terms
LotjaGi5g1v0075100.5
n.a. 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075100 LjG1.1_chr5 12417102 12418055 -
4 domain predictions
3 GO terms