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LotjaGi1g1v0693700.1

Overview

Field Value
Gene ID LotjaGi1g1v0693700
Transcript ID LotjaGi1g1v0693700.1
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0693700
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:126125800..126127925) extracted from Lotus japonicus Gifu genome v1.2.

AAGGAGGTCGGTGGTGGCGCCTGGACTTTGCCTCTATGTTTCCCTTTGCTCACCTAGGGCACCTCGTTCTTTTATTAAAA AAAAGTTTTTGAATGGAAAGACTGTTGGGTCTAAAATTTGTAGAAGCCTACCTAGGCCCAATGGCCCATACAATCAGGAG TACTAGCGATTGACCAAAAAATTGAGGGATAACTCAGAAGTTCACTCTCTATATAACCAACACGACACTCCCATTTCTAG GGTTAGGGTATTCATCTGCGGCTGCTGCACACACTCCATCTTCTCCGATTTCCTCCAACGCTTGTCTACGTCGAACTAAG CTTCCACAGTCATGGGGTAATACAACATTACATTTCCCCCCTCTTATTTGTTTCAGATGATAATGTTACTATATGCTTTG GGAATCGATTTGAGCGATTCAAAAATTTGATCTTTTTGTTATCTTCCGCAATTTTTAGTGCCCCTTTATGGCTAGCTAGC GTTTAGATCATGTTGGATACTTTGCTTATTTATGGTCTGGTTTATATTGCTTCCTGAGAAATTTGAGCATGAAAATATGA AGTTGATCAATCTGGTAATGTGTGTGGTTGAGTTTCTGCATCCATTACTGGTATAGGTAGATCCATGTGTAGTCAATTGA TGTGTGATTTGCTTCTTACTGTTGGCAATTCATGTCTTTGAACTTTGGTATTGCTTCCACTAAAATACAGCAGTTTCATT TTGTTTATTCATAGGTTAGAGGTTAATTCTAGTATTGAACACTGTTTATCTGTTTCAATAAACCTATTTTAGCTATTTAA TTTGAATTTTGCTGTGTGATCTGCTTCTTACCTTGGCAACTCATGTCTTTGAATTTGGTATTGCATCCACAAAAATACTG CAATTTCGTTTTTAATTCATAGTTTAGAGGTAAATGAAGTATTGAACACTGTTTCTTTGTTTCAATAAACCATTTTTAGT TATTTATCCTTTTAGACATGATATTATTTGAATTTTGCTAATCTTTTAAGCATATAGGGGCTACTATTTTTTAAATTTTA TGTACGAATATTAAAAAACAGAAAATTAAGTTGCTAGTTTGCTGATTATGCAGGAAGACTAGAGGAATGGGAGCTGCCCG CAAGCTGATGTCTCACCGTAGGCGGCAACGGTGGGCAGACAAGTCATACAAAAAATCTCATCTTGGAAATGAATGGAAGA AGCCTTTTGCTGGTTCATCCCATGCCAAGGGCATTGTTCTTGAAAAGATGTAAGATTAATTTGTGTTGTTCGATATATCT TTTACTATACTATTTCCTTAATTTGAGCTTCTGATCTTAAAGATATTGTATGGCATTTTATATGCAGAGGTATTGAGGCT AAGCAGCCTAACTCTGCCATTCGAAAATGTGCTAGAGTTCAACTCATCAAAAATGGGAAGAAGATTGCTGCATTTGTTCC AAATGATGGTTGCTTAAATTACATTGAAGAGAATGTGAGTGATCATATTATTTTGCTGCTTTCATTTTTTTATTGTGCTG CATATGCACTGCTATTTTACTTATCCTCTTGAATCTGTATTTGTATTGAAATTTATTGTATAATATGGCGATGTGGCTGA TGGGTGTAGGATGAAGTATTGATTGCTGGATTTGGACGTAAAGGTCATGCCGTCGGTGATATTCCTGGTGTCAGGTTCAA GGTTGTGAAGGTTTCTGGTGTCTCCCTCCTAGCTCTTTTCAAGGAAAAGAAGGAGAAGCCTAGGTCTTAAATTTTTGGAA TGGCGCTTTTCTTAACAGTTTCTCTTAAGAGTTACGTGAACTTTGCTTCATGAGATTGAATGTCTTAAGTCGGATGGAAT TTTGTATGCGTAATAGTAAAATAGTAATTTCTCTTTAACATCATATGATTCATAGATACATTATCATCGTTCTCCTTGTG TTATCTTTCTTCCGATTTACAGTATGCTTTGGCTTATCTAAAAAAGCACAGTAAGCTTTGCTTATTTTATCAAACTAGAC TAACGTAAATTCATTTAAGGGTTACTACGTGTAGGTAAATTGTTGTATTTTTTTTTGTTGGACGAGTTTTGATTTAGGGA ACCAAACAACACTTATTAAACAAGGATAGTCAAATCTTAGTTAGAG 

CDS sequence (LotjaGi1g1v0693700.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGGAAGACTAGAGGAATGGGAGCTGCCCGCAAGCTGATGTCTCACCGTAGGCGGCAACGGTGGGCAGACAAGTCATA CAAAAAATCTCATCTTGGAAATGAATGGAAGAAGCCTTTTGCTGGTTCATCCCATGCCAAGGGCATTGTTCTTGAAAAGA TAGGTATTGAGGCTAAGCAGCCTAACTCTGCCATTCGAAAATGTGCTAGAGTTCAACTCATCAAAAATGGGAAGAAGATT GCTGCATTTGTTCCAAATGATGGTTGCTTAAATTACATTGAAGAGAATGATGAAGTATTGATTGCTGGATTTGGACGTAA AGGTCATGCCGTCGGTGATATTCCTGGTGTCAGGTTCAAGGTTGTGAAGGTTTCTGGTGTCTCCCTCCTAGCTCTTTTCA AGGAAAAGAAGGAGAAGCCTAGGTCTTAA 

Protein sequence (LotjaGi1g1v0693700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGKTRGMGAARKLMSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKI AAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite 1 26 26 -
PANTHER 1 142 142 2.7E-97
PANTHER 1 142 142 2.7E-97
TIGRFAM 6 141 136 2.9E-53
MobiDBLite 10 25 16 -
PIRSF 16 142 127 3.6E-33
SUPERFAMILY 20 140 121 4.03E-34
Gene3D 25 142 118 1.3E-65
CDD 26 139 114 4.68989E-75
Pfam 31 141 111 6.7E-50
ProSitePatterns 59 66 8 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0693700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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