Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi5g1v0075100.5

Overview

Field Value
Gene ID LotjaGi5g1v0075100
Transcript ID LotjaGi5g1v0075100.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description 30S ribosomal protein S12; TAIR: AT5G02960.1 Ribosomal protein S12/S23 family protein; Swiss-Prot: sp|P46297|RS23_FRAAN 40S ribosomal protein S23; TrEMBL-Plants: tr|I3ST84|I3ST84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0075100
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr5:12417102..12418055) extracted from Lotus japonicus Gifu genome v1.2.

TTATCTACTAAAAAAGCACTAAATAAGCTCTACTAAGTGCTTTTTTGTTTGCATCCAAATGGGTTCTAAGTTAATATCTA TCAACCTAGCTCTTTTTTTGTTCTTTGTTCAGTTTTGTGTGAGGGGGTTAGCTGTACTTGAATATTGTTAGAAAAATATT TGATGAACATGGAACTTGATGACATGACTGTCTTTTTGTTGACCTAATATGATATTTTGCTGTTAGAGGAACCAGGAAGA GCTTAAGTTGTGGGAAATTTAATTCTTCTTACTTGTTTACAGGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTGATGT CCCACCGCAGAAGGCAAAGGTGGGCTGACAAGTCATACAAGAAGTCCCATCTTGGAAATGAATGGAAGAAGCCTTTTGCT GGCTCATCTCATGCCAAGGGAATTGTCCTTGAAAAGATGTGAGAATAGTTTAATTTGATCTTTTCTTTCTCTTACTAGTT GAATGTTTCTTTGATTAGTGAATGGCATATGATGTTGAGAGATTAATGTTGTTCTATATGCAGTGGTATTGAGGCTAAGC AGCCCAACTCTGCTATTCGTAAGTGTGCCAGGGTTCAGCTCATCAAGAATGGGAAGAAGATTGCAGCATTTGTCCCCAAT GATGGTTGCTTGAACTATATTGAAGAGAACGTAAGTGCTTGTCCATTTTTTATGTTTGTATGGTTATTCTTTCTAAGCTG TAACATCTTGAGTTGTCTCAGTTCTGTTTTATATTGAATTAGAAATAAGATATTTATCAATTGTGTAATGTGGGGTGTGG CCCATGTTTGTAGGATGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTTGGTGATATTCCTGGTGTCAGGT TCAAGGTTGTGAAGGTCTCTGGTGTGTCTCTTCTTGCCCTTTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTTAA
Download Genomic Sequence

CDS sequence (LotjaGi5g1v0075100.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGGTTCTAAGAAGACACGTGGAATGGGAGCTGCTCGCAAGCTGATGTCCCACCGCAGAAGGCAAAGGTGGGCTGACAA GTCATACAAGAAGTCCCATCTTGGAAATGAATGGAAGAAGCCTTTTGCTGGCTCTGGTATTGAGGCTAAGCAGCCCAACT CTGCTATTCGTAAGTGTGCCAGGGTTCAGCTCATCAAGAATGGGAAGAAGATTGCAGCATTTGTCCCCAATGATGGTTGC TTGAACTATATTGAAGAGAACGATGAAGTCTTGATTGCTGGATTTGGACGAAAAGGTCATGCTGTTGGTGATATTCCTGG TGTCAGGTTCAAGGTTGTGAAGGTCTCTGGTGTGTCTCTTCTTGCCCTTTTCAAGGAGAAGAAGGAAAAGCCAAGGTCTT AA
Download CDS Sequence

Protein sequence (LotjaGi5g1v0075100.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MGSKKTRGMGAARKLMSHRRRQRWADKSYKKSHLGNEWKKPFAGSGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGC LNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 31 31 - –
PANTHER
PTHR11652:SF42
4 133 130 2.9E-79 –
PANTHER
PTHR11652
4 133 130 2.9E-79
IPR006032
MobiDBLite
mobidb-lite
11 27 17 - –
SUPERFAMILY
SSF50249
22 131 110 2.31E-27
IPR012340
Gene3D
G3DSA:2.40.50.140
27 133 107 5.3E-53 –
CDD
cd03367
28 130 103 3.33856E-63
IPR005680
Pfam
PF00164
45 132 88 4.7E-42
IPR006032
ProSitePatterns
PS00055
50 57 8 -
IPR006032

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0005840
Cellular component Ribosome An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015935
Cellular component Small ribosomal subunit The smaller of the two subunits of a ribosome.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi5g1v0075100.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…