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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008637
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 9 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.153s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0282219.1
n.a. similar to Nicotiana HR lesion-inducing ORF [Medicago sativa] gi|3885517|gb|AAC77929.1| chr0 146324124 146327329 +
2 domain predictions
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Lj1g3v4483590.1
n.a. Actin-related protein 9 [Aegilops tauschii] gi|475408288|gb|EMT00883.1| chr1 52552918 52554365 +
2 domain predictions
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Lj1g3v4483590.2
n.a. HR-like lesion-inducing protein-related isoform 1 [Theobroma cacao] gi|508714084|gb|EOY05981.1| chr1 52552918 52556171 +
2 domain predictions
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Lj5g3v1051340.1
n.a. HR-like lesion-inducing protein-related isoform 1 [Theobroma cacao] gi|508714084|gb|EOY05981.1| chr5 17175624 17179215 +
2 domain predictions
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LotjaGi1g1v0710600.1
n.a. HR-like lesion-inducing protein-related protein; TAIR: AT4G14420.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|C3PNX7|SYY_RICAE Tyrosine--tRNA ligase; TrEMBL-Plants: tr|A0A151TUN9|A0A151TUN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0710600 LjG1.1_chr1 127895439 127898807 -
2 domain predictions
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LotjaGi2g1v0284500.1
n.a. HR-like lesion-inducing protein; TAIR: AT5G43460.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|P0CJ24|KAX_ISOMC Potassium channel toxin ImKTx88; TrEMBL-Plants: tr|I3S0I6|I3S0I6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0284500 LjG1.1_chr2 75748006 75763330 -
2 domain predictions
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LotjaGi5g1v0179300.1
n.a. HR-like lesion-inducing protein; TAIR: AT4G14420.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|B1YSS5|MURC_BURA4 UDP-N-acetylmuramate--L-alanine ligase; TrEMBL-Plants: tr|I3S847|I3S847_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0179300 LjG1.1_chr5 45695135 45700583 +
2 domain predictions
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LotjaGi5g1v0183700.1
n.a. HR-like lesion-inducing protein; TAIR: AT5G43460.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|A4GYX4|TI214_POPTR Protein TIC 214; TrEMBL-Plants: tr|I3SR83|I3SR83_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0183700 LjG1.1_chr5 46766074 46768941 -
2 domain predictions
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LotjaGi6g1v0006400.1
n.a. HR-like lesion-inducing protein; TAIR: AT1G04340.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|P0CJ24|KAX_ISOMC Potassium channel toxin ImKTx88; TrEMBL-Plants: tr|I3SRH0|I3SRH0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0006400 LjG1.1_chr6 1279084 1282428 +
2 domain predictions
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