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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0710600 |
| Transcript ID | LotjaGi1g1v0710600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HR-like lesion-inducing protein-related protein; TAIR: AT4G14420.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|C3PNX7|SYY_RICAE Tyrosine--tRNA ligase; TrEMBL-Plants: tr|A0A151TUN9|A0A151TUN9_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0710600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:127895439..127898807) extracted from Lotus japonicus Gifu genome v1.2.
AGACCGTTTTACCCTTTTGATAGTTCGCAAAAAGACTATGCTACCCTTCCCCACGCTCTCGTTTTCAATTTTGGCTTCGC GAAAAGTAAAACCTCACCAAAATTCTCCGCTCTCTCTAGCTTTCTCTCTCTAGCTTTCTCTCTCTACAATCACCATGGCC GTCGAATCTTTCCTCGGCAGAGTCCTCTTCGCCTCCGTCTTCATCCTCGCCGCGTACCAAGAGTTAGTCCCAATTCTCCA CTGTTCCTTTTCTCTGCTCTGTGTTTTTTTTTCCCTGTTAATTTTTATGGCGTTTTCATCATGAATTTTGGCGATTTTTC TCATTCCAATTTTCTTCTACTGAATTTTTTGCTCTGGTTGGATCTGCTTCGTTCAATGCTGTAACTCCATATCTGAGCAT AAAATCTCAGCAGATCTGTGTTTTTGTTTGATTCTCTTACATGTTACAGTATCAGATTGATTTTATGAATGCATTTATTT CATCGGTTCTTGCTGTCTTTGATTACTGTTGCTGTTGTTATAAATTCGTTTTAATTTACTGCAAATTGTCATTAACACGA GTAATTAACTGGCTTATATCAGTTTAACTCTTTAATTATTCTCCCTTGGGTTATTGTTTGCACTTGGCGAGTTGGTGTGA GGTGTAGTTTGCTTCACTATGATTTTGTCGATGAATAATTGAGCTGATGCCAAGTAATTGTGGTTGGTTGTCAAGTAAAT TGTGAGGTGTGATGTATTATAGAGGGTAATTCATAATTGTCTTTTTTTAATTTTGTTTATAGTGTATTTTTGTGAAATTG GGAAATTAATCGGTACAAAGTTTTCAACATTAGTTGATTATCAGCTGCTGAATATGTGTAACGAACTGACCCTTAAGGAG ATGTTGAGTGTGATAAGAAATTGAACTGAAAATGACTATTTCTTGGGTGTGGTGGGGGTATACAATTGGTCTTCAGTAGT CATAAGCCATAACCCTTGACCCTAATGGCCTAACCTGTTCCTGTAAAGTGCTGGGGGACCCTGATGAGATTTATCTTGTA CCAAGCTATGGTTCTAATGGAGACCAATTTTGTGCTTTTGTTTTGGGATTAAGGGGTAGAATAGATTGAGGGAGACAAGT TTACATCTCTATTACATGCTGCATTTCTGATTGCTATTGCTAGTGGAATTTTGCCTTCTGATTGAAGCAGAATCTTGTGA ATATTTTGCCCCCTTTCTTTTCTATACCTTGCTGTTTGCTAATTAAGTTGGATAACTTGCATTCAATATGAACCTGAATT AAAAGGCTTATTCATCATATTTTTTAAAAGTTTATGGTGGTCCTCATGTTTACATGTAATCAGGGATTAGAAGCTAAAAA ATCTTTCCATTTGATATTTTAATCCTGGATACACTATTGTTAATTGGTTTTAAGGCTTTTATTTTTTCTTACTCTCTTTT TATACTGATACAGATTTAATCAATATGGGGTTGATGGGGGACCTGCAGCAAAATCAATCAAGCCAAAGTTTGATGCCCTT ATACATCAAGTACATTCTCATGTCAGCTTTCAGCTTCCAGGAATTGATGTTAGTCTCTCTTCTCACTATCAATTATCTAA GGAAAGCATAATTAAATTAGAAGAAAAAATATAAATGTCCTGGGTAGAACTAGAAACAGAGGAATGGGGACTGGTTTGTT AAATTAAAACAGGAGTGTGGCATGGAATTGAGACCCCTTGTAAAGTTAATAGTTAATACTGTTCATGCATTTTTCTGTAG TGTGGTTGATGTCTGATTAATGGTAGATTAAAAATCGTCCATGGTATTTAGTAAGGCCTTTGCAGTTGTCACTGCACATG TTTAAATAAGACTCTCATGTAGTGTGGACAAAGTTTGTAACTTATATAGACTTGTCATTTTGGCCTTGAGCCTAATGTTT TCTTGGCTGCTTGCCTATACTCAATTTCGGGTTCTCAGAAGGCAATATATGTTTGTGTTGGATATGACTTGTTTATCAAG TAAACAAAGGCATAGTTTTGATAAGAAAACCGTATAACTGTTCTGAAAAATGAAATATGTGGAGGAGGCAGGAGGGGAAG AGTGGAAGACGCAAGGAGAGTTATGAGAGGGCATGTTGGAAAAGAATTGAATTTTATTTTATGATCATGAATGTTATGCA TATAATGCATCCTTTTATCAGCATGCCATCGATAAAATACTCTATTTTGCATGCATATTACAATGCTTATTTATATCATT GATGTCGTGAACAGATGAAATATATAGTTGCTGGTGCTATTGCTCTCAAGGGCATTGGAGGACTTCTTTTCATACTTGGC AGCTCTTTCGGAGCTTTCCTTCTGGTTTGTAGTTTCTTTATGAAATCAAGTGTCTCTCATCTCATCTCAAGTGCTCAGTT TTTAAGCTGTGTCTTTTTTCTCCATGAAGCTTTTGCATCAGATGATTGCTACTCCGATGTTGTATGATTTCTACAATTAT GATGCTGATGACAAAGAGTTTACTCAACTATTCATCAAATTTACACAGGTCAGTGCAGTGGGTTCCCTTTTTTCTTTTTA TTATTTATTTTCATGTTGAATGCCTCCAATTCTAGCAGTCATCACAATGTTACTTCATCTTCATGTATTGCTACAATTGT TTATCAAATGTTATTACTCCTTGCAGCATATGGCTCTCTCAGGGGCCTTGTTATTTTTTATTGGGATGAAAAATTCCATT CCTAGAAGACAACCCAAGAAGAAGGCCCCCAAAACAAAAACCTATTAGTAGCCACAATTTAAAGACTCATTTGGCGGATT TTCCTGGTTGATCATTATGCCCATTCTCCATTTCCCCATTACTTGGCGCTTGCCCCCCCCCCCCCCCCCCCGCATGGGTA TTGTTGTAGCATACTAGCATGCCTGACATGGACCATGTATAATTTTCTTGAATATTTATACGTATTTATTATCTGTTCTT TTGGTTGACATTAGGAACTATCTTTCAATTGCTAAGACGGTAAAAATGATCAGAATCTTGTTTGAAGTTTGTATCTATTT TTTGCTTCACATGATCCGCTCGGATTTTGTCAAGGGAGGGAACTAATCAACTAAATACAGTAATCACCAATGTATGCTTG ATTACTCTTAGTTAAAGTCTTTTGTTCGAATCTTGAGTATTGGAAAAATCTCGAGAGAGGCAGAGAGCTACCCTACTAAA CGTGGGTATTTCTGGCTTGAACATATTGATCTTTGTGGACTATTAAAATTCTACTGATTGTATTAATTTGAAAATGTATT ATCATCTGTCTATTTATGATTAGTGTTTTTTTTCCATCGGAAAACATTTATGATTAGTGTTAATGAAAAGACTAACTTAA TTATTTGAA
CDS sequence (LotjaGi1g1v0710600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGTCGAATCTTTCCTCGGCAGAGTCCTCTTCGCCTCCGTCTTCATCCTCGCCGCGTACCAAGAATTTAATCAATA TGGGGTTGATGGGGGACCTGCAGCAAAATCAATCAAGCCAAAGTTTGATGCCCTTATACATCAAGTACATTCTCATGTCA GCTTTCAGCTTCCAGGAATTGATATGAAATATATAGTTGCTGGTGCTATTGCTCTCAAGGGCATTGGAGGACTTCTTTTC ATACTTGGCAGCTCTTTCGGAGCTTTCCTTCTGCTTTTGCATCAGATGATTGCTACTCCGATGTTGTATGATTTCTACAA TTATGATGCTGATGACAAAGAGTTTACTCAACTATTCATCAAATTTACACAGCATATGGCTCTCTCAGGGGCCTTGTTAT TTTTTATTGGGATGAAAAATTCCATTCCTAGAAGACAACCCAAGAAGAAGGCCCCCAAAACAAAAACCTATTAG
Protein sequence (LotjaGi1g1v0710600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAVESFLGRVLFASVFILAAYQEFNQYGVDGGPAAKSIKPKFDALIHQVHSHVSFQLPGIDMKYIVAGAIALKGIGGLLF ILGSSFGAFLLLLHQMIATPMLYDFYNYDADDKEFTQLFIKFTQHMALSGALLFFIGMKNSIPRRQPKKKAPKTKTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 157 | 157 | 6.2E-88 | – | |
| Phobius | 1 | 5 | 5 | - | – | |
| PANTHER | 1 | 157 | 157 | 6.2E-88 | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| Pfam | 2 | 138 | 137 | 1.6E-54 | ||
| Phobius | 6 | 24 | 19 | - | – | |
| Phobius | 25 | 77 | 53 | - | – | |
| TMHMM | 70 | 92 | 23 | - | – | |
| Phobius | 78 | 98 | 21 | - | – | |
| Phobius | 99 | 117 | 19 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 118 | 138 | 21 | - | – | |
| Phobius | 139 | 157 | 19 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0710600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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