Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0179300 |
| Transcript ID | LotjaGi5g1v0179300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | HR-like lesion-inducing protein; TAIR: AT4G14420.1 HR-like lesion-inducing protein-like protein; Swiss-Prot: sp|B1YSS5|MURC_BURA4 UDP-N-acetylmuramate--L-alanine ligase; TrEMBL-Plants: tr|I3S847|I3S847_LOTJA Uncharacterized protein; Found in the gene: LotjaGi5g1v0179300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:45695135..45700583) extracted from Lotus japonicus Gifu genome v1.2.
GGAAAAATATAAAAAATTCACAAACCCCATCATGTACTCGTATCGACCTCCAATCATGGTCATCCAAATCTCATAATTGG CCATGAGTCAATGAGTGGAACGTTAAATGCAGCCAGCCCGTTGGGTCGTGTCAGGCTCTAAAGAAGCCCAGTGGCCACCA AAATCCATCATCTGTACATTCAAATTGACGAAACTACCCTTTCTCTCTCAACAAAACAAACAATCTCCTATAATTTCAAA TCTCTCTCTCATTTCCACTCTGTCCTCCAGAAAAAGAAACAGAAAGAAACGAAAAACCACACACCATTTTCACGACGCCC TAGATTTCCTCCGAGGATGGCCTTCATCTCTTTCCTCGGCAGAGTCCTCTTCGCTTCCGTTTTCATCCTCTCTGCATACC AAGAGTTTGTGCTTCTTTTTCTGCAAATTTTCATAGTTTTTTTGTTGATTTGTGTTGTGTGAATGTTATTGTGTGGTTTT TCGGTTTTGGATGAGAATTTGGATGAAGTTTGTGAATTGTGAGCATGTTTTGTTTGTGTAGATTTGGTTGTTGTTGTTGT TGACTTTTTGGTTGTTGGTTGTGGTAGTTGGACTTGGATCTGTGACGTTGTAGATCTATGTTTGTTTTGTCTTGTTTGGT CAACCGTGTTTTTGAAGCTACGTTGACAACGTTGTTATGTTGCTGGATGCGACTTTTCATATGAACATGTTATGCTCTGG CTTGGTTGATGTGCAAGGAATCAGATTCTCTTCTGTTTGGAGCAAACCTGCTAGCATGAATGTTGTTATGTTTGGAGCTG GATAGCAACTGTTTTCATGGTTTTATTATAAATTTGTTTTTGTGTGTTGAATTGAATTAAACTGGTTAGTATGATGGTTA TTGTTTGGAAGTGAAATGTGGTTTGTTAATGTGACTCAAATCGGATCAGAAATGATTTAAAGGATTTTAATGATGAACAG TCAATGTAGGTAATCCAGCAATCATCTAGGGATTCATCTTCTATCTTGTTTCTGAGTCTATTTTTTCACAATCTTAATAG CTGAAAGTGATCTCTCTGTTGTAGTAGTTGAAACAGGTGAAGTCTAAATCAAAGGATCATTAAATAATTTTATTATTTTT TGCTAACATTAACATAACTCAGGAGTTGTTTTTTAATTTTATGGGTGGGGCAGTATATAATTATTAGAAGAGGGTCAAGG GATAAGTCCAATAAAAAAAGCTTTGCACATAATATAATAATGAGAACAATATTAAGGGATCGGAGCATGGCTAATTTAAT AATATTGCTAAAAAATAACATTACGGAACTCTTTGAATTATTAAAGTGAACCAGCTTAACACTTCTGAACTCTTTTACTC AATATTCATGGAGGAGGGGTGGGGGGCCATGGCCCCCAACTTGCCACCCCACCCATCCGTCCCTGCGGTTACTATATGAT ATTACTGGCTAACATCTAAGCTAGGCATCATGTGATAATGCATGCCATGCATGGTACAAAAGAATGGGTGACATTGAATT TATGACTGGTTGTTATATGCACAATTTTAAATGCAATATTAATAAATTATTTGAATTTTAATCATTCTTTTTAACATACA ATAAAGGGTAGTTAATTTGTAGCCTTGGGTATCCAGTTTGTGTTAAATACTCGGACTTGGAGGGAGGGCCTTGCATCTCA TAGTGCTGGAGAGTGCAAGGGTCTATTCGATTCTATCAAGATTGCTAATTTACTTGTTTGCAGCATGATTACTAATTTAC TTGTTTGCAACAAAGCTATTATGGACAATGCTGATAAATGCTCTTGGGCTACTAGTTAAGGAAACAAAAGTGGTGGAGCA TTTGAAAGAAATTAAAAGCATGTATTAGATATTCCTTAACTATTACCCTTAGGCCCTAGCAAGACCTTTTTTGCATTGAG AAATACTGTCTTTGAATTTTTGAGCTGTAAGTGTCTGATGTTAGTCGTTATGTTGAATACTTGCCATAACCGCTCAGTGT AATGTGCAACTGTGCAGTGACTTGGAAGAGTTGATGGTGTTGTTTGCTTTTGCTTACTTTTTAATTTTTACGCCAAGAAG CTGAAAGCAATACACCTAGTGGGGAAAAGCTTTGGTTGTTTTTTGTTTGTTTAGATGCTAGAAACTATTCTTTCTATTTG ACCTTTTAATTATGGAGGAAAGCCTGACAGCTTTTAGTTTCATTTTTATTCTTCATCTTCTCTTTTTGTAGTGTAGTCGA ATCTCTTGCTTATGTGTCTTATGTGTTTTACTATAGATTCAATGAATTTGGAGTTGATGGTGGACCTGCTGCTAAATCAC TCAGACCAAAGTTTGATACCTTTACATCTCGAGTCCATTCCCAAGTTGGCTTTCAACTTCCAGAGATTGATGTTAGTCTC TCTCTCTCTTTCTCCCCCCCCCCCCCCCTTGCGTGTGTGTGTTTTGAGGGAAACTAGATCTTTACCCAGGGGAAACATCC TGAGTTTATTTGTAATTGAGAACTTACTTAATTCAATAATTAAATTTAAGTAATACGATCTCATAGAAATGTAGATATAT TTTGAAAAATGCTTGTTCCCTTCCATTTACAAAAGGAATATGCCTGGTCAGTAGAAAAAAAAGAATGAGGACAAGATTGT TAAATTAAGAGTCTGGTATGAACTATGTAGATGGAAATTGCATGTAATGTTTTTGCATTTCTGTTATTATGGTATAGGTC TGATTTCATGATTAATGGTTGATGAAATATCATTATTAAATAATATTTCTACCTTAGTTAACCCACTGGTTTAAACTAGG ACATGTCATGTTAGATGGACAAAGTGTTAATTGATATTAATTTTTCCGTTATCCTTGGGGCTTATTGGCGCTTGTCATCC TAAGGTTAGGGTTCTCAACTGGCGAGATTATAGTGTTTGGGTTTCCATGAATGATAAAATAGAGAAGACAATTAATAGAA GTGTGGATCTGGCATGGAAAATGAAAATGTTTTGGGTGGGCTGTGGGCAGGGGTTGGGATGTTAAGAACATCACCATTGA GGATAATTGATTTTCTCGGATTATAATTGTTAGCATATAGCACATACTCAGGTTCTCCCATCAAAATGTACGTAAATATA GACGGTGCTTTCCTCTATATGCATATTACATTATTGTGTATGCTTGAATATTCCCTGATAATAATGGTTTCATGAACAGA TCAAAGTTTTAATTGCTGGGGCTATTGCTCTGAAGGGTGTTGGAGGGCTTCTTTTCATATTTGGCAGCTCTTTTGGAGCT GTGCTGCTGGTTTGTTGATAGATTTTTCCATTGGATTTCACATTTATCTCATGTGCTCAGTATCTAAAGTTTTTTTTTGG TTGTAGCTCTTGCATCAGTTGATTGCTACTCCAATCCGCTATGATTTTTACAACTTTGACAATGAGGATAAAGAGTTTGC TCAACTTTTCATCAAATTTACACAGGTCAGGGCAGTGAGTTATTTTTTTTATTTTAAATTATTTTCATGCCTATGTGCCC AAATTCAAGCTGTTACAATTATTTATTAAATATAATTTACTCCTTGCAGAATATGGCTCTTTTTGGGGCTCTTTTGTTTT TCATTGGCATGAAAAACTCCATTCCCAGAAGACAGCCCAAGAAGGCTCCAAAAACAAAAACCTATTAGTAGCAGTGTTGG AGGATCACTTCAAGGAGTGTCTGAGGTTTTTCCCTGGTTCTTCACTGTATCCGCTTGGGTATTCTGGTTCAGAGTCAATC CCTTTTGAGCTTTGTAATTTTGGCTTCACTCTCAGATTAAATTACTGGCTAGTATCATTGTTATTATTTTTCATATGATT TGGAAGCACAGGGTTAGGAAACTATGTTTCAATTGCTAAACTTGTCTTTGAAAAGGTGAAAACAATAGGATTAGAGGCTT TGCGCTTACTACAGGGTGCCAATTTCATTACGTTCCTGTAATTTTGATGTGAGGTCCTCAAATTCTGGCCCTTTGTTACT ATTTGACATAACTGAGTTCTCCACCTTGGCCCTTGAATTTTATGTTCCTCTTCTGATTTTTCTTCTTTTGGTTCGTATAA TACCTTCCTGTTATATGGTGATCCTTTTGAATTAATTTAAATGTATGAATACAATGTCAAGAGGCATGCTGATGGGTCAA TAACAAGGTACAAAGCGAGACTAGCAACCAAGGGTTACATCCAAATTGAAGGTCTGGATTTCCTCAGTACCTTACCTCAA GTACCAAAAACTACCACCATCCGAGTTGAAGGTCTAGATTACCTCAGTACCTTATCTCCAGTACCAAAAGCTACCACCAT CAGAATGATTCTTGCCTCAGCTCGTTGATGGCACTCCACCAATTTGATGTCAATACTGCTTTTTTCTTTGAGATTTGCAT GAGGATGTCTGTCTGACAATTCCACTTGGGTTTTCTTCCACTAAATCCACTAAGTGTGTAAGCTTTTGAAGTTACCTTTA TGTACTCAAACAAAGTAGTATGAGAAATTGTCACAATTACTCCTCCAATATGGATATGTTCAAGCACATGTTGATCACTC TCTTTTCACTAAGGGTTTTGTCACAAAGAGAACCACTACTTCTTTTACATCATTACTTGTCCATGCAGATGATGTGCTTT TGATAGAGGATTCCTTCATTGACTTCTCTTTTAGTAAACAAGTGTTTGATCAGTCCTTTGACATATTTAGGAGCTCTCAA ATATTTCTTGGATCTTGAAGTATCTTTATTTAGGGAGGTATCACTTTATGCCAGGGAAAGTGCTGTTTCGATCTTCACTC AGATTTGGGTTGTTTGGTTGCAAAACGGTGAGTGCACCCATTGATTCAACAGTCATTTTCATCAGGATCAGAGTTCTCCC TATCCTAAAGTTGCCTTTTATCGTTGCTTACTTGGTTTTAGTGATGCCGATGAGGGTGGATGTGCGGATTCTTTTATCAG TGGCTATTGCTCCTTGGTTCCTCTCTTGTTTCATGCAATTCTAAAAAGCAAGTTACTATGAATCATTCGCCTTCCGAGGC TGAATACAAAGCTTTAGCCACAACCACTTGTGAACTACAATGGTTATCTTGCCTTCTTCATGATTTGCACATTACATGCA CACGACCTGTTATTTTATACTGTGATAATCAAAGTGCATTGCATATTGCTGCTAACCCAGTTTTCCACAAATACTTAAAG CACCTCGACATCAATTGCCACATTATTCATGAGAGAACACCTGTTGTATTGATGAAGTTGCTGCCAGTTTCTTTAACCAA ACAGGTTGCCCCTTGTTGCCTAGATTTTTCTTGCAAAATATCTCTAAGCTGACTATGGTGATATCTACCACCCTCAGCTT AGGAGGGTATTACTAGAAGAATAGGAAATAGCATTAAGTCATTCAATTCATCAGTTATAACTAACTGATTCGTTTTCTGG TGTTCTGAT
CDS sequence (LotjaGi5g1v0179300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCTTCATCTCTTTCCTCGGCAGAGTCCTCTTCGCTTCCGTTTTCATCCTCTCTGCATACCAAGAATTCAATGAATT TGGAGTTGATGGTGGACCTGCTGCTAAATCACTCAGACCAAAGTTTGATACCTTTACATCTCGAGTCCATTCCCAAGTTG GCTTTCAACTTCCAGAGATTGATATCAAAGTTTTAATTGCTGGGGCTATTGCTCTGAAGGGTGTTGGAGGGCTTCTTTTC ATATTTGGCAGCTCTTTTGGAGCTGTGCTGCTGCTCTTGCATCAGTTGATTGCTACTCCAATCCGCTATGATTTTTACAA CTTTGACAATGAGGATAAAGAGTTTGCTCAACTTTTCATCAAATTTACACAGAATATGGCTCTTTTTGGGGCTCTTTTGT TTTTCATTGGCATGAAAAACTCCATTCCCAGAAGACAGCCCAAGAAGGCTCCAAAAACAAAAACCTATTAG
Protein sequence (LotjaGi5g1v0179300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAFISFLGRVLFASVFILSAYQEFNEFGVDGGPAAKSLRPKFDTFTSRVHSQVGFQLPEIDIKVLIAGAIALKGVGGLLF IFGSSFGAVLLLLHQLIATPIRYDFYNFDNEDKEFAQLFIKFTQNMALFGALLFFIGMKNSIPRRQPKKAPKTKTY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 1 | 138 | 138 | 2.8E-58 | ||
| Phobius | 1 | 77 | 77 | - | – | |
| PANTHER | 1 | 156 | 156 | 5.8E-92 | – | |
| SignalP_EUK | 1 | 22 | 22 | - | – | |
| PANTHER | 1 | 156 | 156 | 5.8E-92 | – | |
| TMHMM | 75 | 97 | 23 | - | – | |
| Phobius | 78 | 98 | 21 | - | – | |
| Phobius | 99 | 117 | 19 | - | – | |
| TMHMM | 115 | 137 | 23 | - | – | |
| Phobius | 118 | 138 | 21 | - | – | |
| Phobius | 139 | 156 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0179300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…