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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR009668
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 5 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.992s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj6g3v1333150.1
n.a. PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine max] gi|356556228|ref|XP_003546428.1| chr6 15934315 15937498 -
2 domain predictions
3 GO terms
Lj6g3v1333160.1
n.a. PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like [Glycine max] gi|356556228|ref|XP_003546428.1| chr6 15935600 15938614 -
2 domain predictions
3 GO terms
LotjaGi6g1v0236100.1
n.a. DNA-directed RNA polymerase I subunit rpa49; TAIR: AT3G13940.1 DNA binding / DNA-directed RNA polymerase; Swiss-Prot: sp|O14086|RPA49_SCHPO DNA-directed RNA polymerase I subunit rpa49; TrEMBL-Plants: tr|I3SLR3|I3SLR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0236100 LjG1.1_chr6 54592565 54598977 -
3 domain predictions
3 GO terms
LotjaGi6g1v0236200_LC.1
n.a. DNA-directed RNA polymerase I subunit rpa49; TAIR: AT3G13940.1 DNA binding / DNA-directed RNA polymerase; Swiss-Prot: sp|O14086|RPA49_SCHPO DNA-directed RNA polymerase I subunit rpa49; TrEMBL-Plants: tr|I3SLR3|I3SLR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0236200_LC LjG1.1_chr6 54592565 54606280 +
3 domain predictions
3 GO terms
LotjaGi6g1v0236200_LC.2
n.a. DNA-directed RNA polymerase I subunit rpa49; TAIR: AT3G13940.1 DNA binding / DNA-directed RNA polymerase; Swiss-Prot: sp|O14086|RPA49_SCHPO DNA-directed RNA polymerase I subunit rpa49; TrEMBL-Plants: tr|I3SLR3|I3SLR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0236200_LC LjG1.1_chr6 54602356 54606280 +
3 domain predictions
3 GO terms