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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0236100 |
| Transcript ID | LotjaGi6g1v0236100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase I subunit rpa49; TAIR: AT3G13940.1 DNA binding / DNA-directed RNA polymerase; Swiss-Prot: sp|O14086|RPA49_SCHPO DNA-directed RNA polymerase I subunit rpa49; TrEMBL-Plants: tr|I3SLR3|I3SLR3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0236100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:54592565..54598977) extracted from Lotus japonicus Gifu genome v1.2.
CCGGGACCCTATATTTGTGAGCAACTTCTGGGTTGAGCTGTTTAAATTGCAGGGAACACATCTGACCATGAGTACAGCGT ACCATCCGGAAACGGATGGTCAAACTGAGGTCATTAATCGATGCCTAGAGACGTATCTGCTTTGCTTTATTGCGGACCAA CCACGCACTTGGCTCCATTGGTTACCATGGGCGGAGTACTGGTACAACACCACCTACCACGCTTCTACGGGAGTGACCCC TTCTGAGGTGGTCTATGGCCGCGCTCCTCCTACTCTGCTCCGTTTCACTATGGGAGAAACTAAGGTTGAAGCCGTAGCCC GCGAGTTGTTGGACAGAGATGAAGCGTTGCGACAACTCCGAAGCCACCTCCTTCGTGTTCAGGGGTATATGAAAGCTCAG GCTGCTAAGAAACGCAAGGATCAACAGTTCAATGTTGGTGAATGGGTGTTTGTGAAGCTTCGACCCCATCGTCAACAATC CGTGGCGCAACAGATTAATCCTAAGCTATCTCCACGATTTTATGGTCCTTTCGAAGTGCTTGAGCGCATAGGAGCAGTAG CCTACAAGCTGCGTCTACCTCACACGTCTCGCATTCATCCCGTGTTTCATGTGTCCCTTTTGAAGAAAGCAATTGGGAAT TATCAGGTAGAGAAGGAACTACCTGAGGGACTAGCGGGAGAACTTCCTCCAACAGTGGAACCAAGTACCGTATTAGCCTC TCGTACCATCCAGCAGCAAGGAGAGACAGTGAAACAATATCTGGTTCAATGGAATGGCAAGACAGCAGATGAAGCCACTT GATGAACTGACCATTTTAAAGCAGTTTCCCGCTTTCAACCTTGAGGACAAGGTTGCTTCTCAAGCCGGCGGAATTGATAG AGCCCTTAGTGAAAGTTGGGTTGCAGGTCATGAGTCTAGGCCCAAAGTGTGGAAAGTGTATGTTAGGAAGAATAAGAGAG GGGAATCTTAGGAGGGTGAGCTGGCACAGTTAGTTACGGCTTTTGCGGGTAGGAAGGTGCAGGGGAGCGTGAGGGATTCC TTTATAAGTTTTCTGTTAGAAAGGATTGAGGTATGATGAGAATTAGTATGTTAAGGATAGAGTGAAGAGAGTCTCTTCTT CTCTATAGGAGTCTTACTCTGGGCAATAGCATTTGCTATTGTATTTACATTTCTGTTTCTGCAATATTAATCAGTGTTTC TCATTCTCATTCCTGGTTTCTCTTATATTGTTACTTTGGTTCTCATCAAATTCAATGTTGGACAACCCAACATTGTCCAA AATTAACCTGGGCCAGAGGATTTCCAAGTACAATCTAACCCAAATTCAAGAAACCTCAACAGCAATATAAATGAATCAAA ATAATGAAAAAGCAAGTGGAATATAATGCCTGAATTCAGGATTTGTTCATGAGCACAACGAGCAAAAGTGTCAAACAAGA TTCAGAACATACCTTGTTATTTTCCCTTTTTGTTCCAAACAAAGCAGTAGTCTCACTCTTTTTCCATTCTTTCTCTTGCT GAGTCGGCTCTTCTATAGTTGAGTTTGCAAGCTCCTTGTCAGCAGCAGCTTCGGCTTTAACATATGGTTCCAACCTGAAT ATCTGAAAAACACCAACAAATTAGGATGACAATCTTTTGATATATGAAAGAGCAAAGAAACATTTTCCACAATGTACCTT GTTAGCAGCAATTGGCACAATCTTCAGGGTCTGAGCTTCCTTGTCAAAAACTCCAAGTGCATGCACAGTTCGGTGTCCGG CCGCGGCCTCACCTGAATAACTCTTTCCAACAAATTCTACTGGAGCACCGGCAGGGCGTACCACGAGCTCCAGCCTTTTG GTCAAGTTCTTGTGTCGGTAAAGTTGGAAATCAGTTGAGCCAGAACTGCTGCCTCCATAAGACTTGAGTGGATCAAAGCC AGAAGGGAAATAGCCAATAATTAGAGGTGTTTTATTCGGGTGCTCATTGACAACTTGGACCTTATAATTAGAACTCCCCG CGCTCAAAATAGGCCCAATTATAAATTGATAGGTTTTATTTTATCAGTCGAATTAGTTAAAAATTAATTAATTAGATTTT TTTAATTTTAATTAGCAGTAGTGAATAAATACCTAGTTAGTTCTACTCAAGTCTCAACACTTCCGCGCAGACCTAGCCAC CGCCGTAGCCTCAGGTATCTCTTCGATTTCACTCTCAGTAGGGGAAGGAGTTATTCAGACCTCTGTTCTTTGCGCTTGCT CGAATCGTTTTTCTACATTTTCATTCAGTATTTTTTAGATTATATTAGGGTGTGTAAAATGTATAATGTATAATGTATGA TGATGGTGCAGGATAATGGATTCGGAGTCTGAAGACACGAAATCACAGCGAGAGTCACTATCCAAGAAGATTAAAAGCAA GAAGAACAAAAAGAAACAGGATGATACTTCGTCTGAAACGATTAATGCTAAGGTCCAAGTTGTCCCTGAGAACCCGAATA AAACGTCTCCTATTATTGGCTATTTCCCTTCTGGCTTTGATCCACTCAAGTCTTATGGCAGCAGTTCTGGTCCAACTGGT TTCCAACTTTACCGGCACAGAAACATGACCAAAAGGCTTCAGCTTGTGGTCAGCCCTGCTGGCGCTCCGGTTGAATTCGT TGGAACAAGTTATACTGGAGAGGCTGCGGCTGGACACCGAGCCATGTATGCACTTGGAGTCTTTGACAAGAAAGCTCAGA CTCTGAAAGTTGTGCCCATTGCTGCTAATAAGGTAAATTGTGAATACGAGAAAAAAATATCTTGCTCTTTCGGATATCTA AAGTGTGTCATCCTAATTTGTGGGTGTTTTTCAGATATTCAGGTTGGAGCCAAAAGTTAAAGCCTTGGAAGCGCTTGACA AGGAGCCTGCAATTTCAACAGTGGAAGAGCTGACTCCTGCAGATTCAGCTTTGAAACAGAGACAGACTACTGCTATGTTG GGAACAAAGAGGGACATAGAGAGGGTATATTCTGACTTGTTTGATCATTTTCCTAGCTGTGCTAATGAACACATCCTTAA TTCATTGTGAAAATCTATATTATTTTGTGACTATGGATATATATTGAAATATATCAGCTAACACAGATTTGCAATGGTAG TGCTGCGATAGTCTGAGAGTAGGTCCGAAGGCCGCAAATCTAGTAGCTTATTAACATAATAAAACTATCATTTTTCGTAC CATATTTGCTTTAGGTATGCTGAGGGGGGGGGGGGGGAATTAGGGAGGGGAGTGAGGCTATTGGGAGAAAGGTTTTGATT CTCACTCATCACTGCTTTTATGGCAGTGTGTGTAAATTGATTGGACAAACACTTGTAAATCAATAGCACTCAACTTCCAA TCGTGCCAACCAAGTGTTAATTACAAAATTTCTTCCTGGCAATTTTCAGCGCAACCAAGTACACTCTTAGTAGGATAAAG CTTCATTTCCCTGGTTCTGGTTGCTTGAAAGAAAAAGTATTGTGTTCTTATTTATGTGTGGTATATCTTGTGAGAGATAT TTGCTATTTTGGAGTTTGTATATCCTTTAAATTAAATGCATTAGCATGAAAAAAATTGTTGATTCTTTTTTACTGTGCTT GTTGTGAGGGTAACTCTATGGGGCTGCTATACTCATTGATTTAACAAGATTGTTTTCTTTTGGTGAAAGATGATTTTTTC TGTGGCCTGGTGAAAACATGAGGGGATGTTATGACGCCCTTTATGCTTTCCTAATCAAATACAATTTCATATGACCACCC ACAGAGTAAAATAATGAATATTTTTATTTAGGGTGCTCTATTAGAGTATCTGTGGTATGTAGACCCATTTGCATGCCTAT GCAAAAAGATTTACCTTTGATAAAGCTGCTACATGTGTTCCTAGATCAATATTATTTTATGTGAATCGTATTACATATTA ACAATTGAATGAGAGCAGAAACACATTCAAGGTTGTGTTTATAGGCGAGTCTTCCCTTGTTTATAGCTAAACTAGCTCCA GCTAATTTCTTTCTTTTTGTTGGAATTGTTGTAAACTAATCTTGGAATTTGGTTAATTCTGCAGAATAGAAGGAAGGACG CTCTCAGACAGGGTGATGATCCTGAATCTCAGAAGAATCTGGGTGAAAAAGTTAAGGACGTTGCCGTTAACAAAGAGGCT CTTGAAAGTACAGAAGTTCATGTTTCTCGTAATTTACCACCATATGATGCTTCTGCAACTACACCTCAGGAGGCTTATAT ATTGGATAAAATCATCCCTAAAAAAGAATGGGAATACCTTGAAGACATTTATGATATGTTGCAACTTGGGGAGGAAGCAG ACTTCAGTGCTTATCCAACTTTTATTTCCAACAGGATAGCAAGGTTAAAGGGGATTAAGGTATCTGTACTAATATAGCTT TCTTGCTTAAAAATATGACTTCGTAGTTGTCAATTAATGGTCATTTGAAGATGTATGAGTTTGAAAATTTTGTTTTTCTG TACTTGTGTTACTTATACTTGCTGAGTATGAATATTCGAATATTCTTGTTTAAGGGATTGTGTAAGCAATTTTTTACTCC CCCTGGCTTAAGTTGCACAGTTAGTTAATATTATCAATCCTATGCTATTGTGGTAGATACTAAACCTGGCTATATTTAAG CCTAATTTTGATTCTGAATCCTGGCTGTCTAATACTTTTAGATTTGTTTTCCCCTATTACAATATTACATCCTGATCTAC TGTCCATGTCTACAGGATGAGGCGGAAAAGAAGAAGATGTCTTGCATATTCTCATACCTCAATCATCTTATAAAGTTTAA AGATCAGCACACCATGCAGGGTGTTTCCTCTGCAAAGAGCCATAAAATCCCCCCCATTCTGCGTTATAAATTTTCATCAA TGTTTGGTGCTACTGAATCAAGAAGGCTGCCTAACGATGAGTTGAATCTGCTTATTTGTTATGTCCTGGTGCTGACTCTT TTCTCTGATGAATTCCGAACTGACTACACAGATATATCAAAGGATCTGAGGATGAGTGTATTGCTCGTGAGACAACATTA TTCGGATTTGGGTTGCAAATTTCTAAGCCAGAATAAAATTTCCTATGCAACGCTTCCTGTCCCTCTTAAGTTTCCTGATT CGAAGCAAAGGAAGCGAAAAAGATAGTAAATGGATCACTTCTGGAGGTTGCCATTTTGGTGCAGTGATGTCAAAAATTGC TATCCAACCCCTGTAGTGGTAGCATTTTTGAGTTATTGTTTTTTATTTGCATACATTTAAGCCATGTTTTTGCTGTTTGG ATAATTAAGAACGTGATTATGAAATTAACATCACTTTATTTGGACTAAAGTTTACGATTGGCTTGGGTTCAATTTGACTC GTCAGTAGGACTGTTTTTAGTATAAAAAAAAAGTCAAAATAATTTGTCTTCTGCATTGTGGTAATTATTTTTAGACATTA ACCTTATGATGCTGCTGCCTGCTGGGGTGTTGTTGGATTTGATTTAATAGAAATGATGTCTTGGTCCTGGTTTAGTATAA CGGTATATAGTTCTTTTACTATTCTTTTTCTTTTATCATACTGGTGTTTTTTTGAACAGTTCCTGCAATATATTAAACGG GGGGCATAGAAGCCAAAATGTCTGCGGTTACAAAAGTCTCAACCTCAGGAGGGACTTCCTCAATCCACACACAACCGGCG AAAGAGGAAGCATGCCTAGCCAAATAGTCAGCCACAGTATTGCCAGGACGGCGAACAAAAGAAATGGAAATAAAATCAAA AGAGCGACAAAACTGGAAACAATCGTTAAGAATAGTAGCTAAATAATTCCTCCCATCTGGAGGTTTTTTCCATAGCTGGA ACAGTTCGAGACAATCCGTCTCCAAGCAAACTCGTCGGAAGCCAAGAGAGATAGCTAAACCAATGGACCAACGAAGCGTA AAAGGGTAAAAATGTAAATGCATGACAATTTTTCTCCAAAATACCATGCGTAGTCATCAAAGCTCCACCACCAACGGTGC CACCGCCAACCTTACTTTTTTGGTCGTGAAGGCCCAACTCTATGGCGTCACCGATGTCATCTTTTACTAAGTACCACCCT TTCCTTCATTGACACATCCCTCAAGCTCTACCTTAACCTCACCTCCTTCTCTTCCACCCTCAGCTCCAAGTTGAAACTGA TTTAAATATGCTATTAAAAATTAGCAGGACTTACCTCCACATTCTACACGCAGGTAGCACTTTGAATCTCAAGCATTTTA TGCACCACACATAAATCTTAAGCACTAGCGTGATTTCTTTTGTGGTTGGAAATCAATGGTCGGTTTGTCATGCCATTCAT TTTATTTTTATTTTATTGATTTTATTATTCAACAGAAGATGATTATAGTGTGATCGAGTAGATCATATATTCAATTCAAG AACAGAAAATGAC
CDS sequence (LotjaGi6g1v0236100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATTCGGAGTCTGAAGACACGAAATCACAGCGAGAGTCACTATCCAAGAAGATTAAAAGCAAGAAGAACAAAAAGAA ACAGGATGATACTTCGTCTGAAACGATTAATGCTAAGGTCCAAGTTGTCCCTGAGAACCCGAATAAAACGTCTCCTATTA TTGGCTATTTCCCTTCTGGCTTTGATCCACTCAAGTCTTATGGCAGCAGTTCTGGTCCAACTGGTTTCCAACTTTACCGG CACAGAAACATGACCAAAAGGCTTCAGCTTGTGGTCAGCCCTGCTGGCGCTCCGGTTGAATTCGTTGGAACAAGTTATAC TGGAGAGGCTGCGGCTGGACACCGAGCCATGTATGCACTTGGAGTCTTTGACAAGAAAGCTCAGACTCTGAAAGTTGTGC CCATTGCTGCTAATAAGATATTCAGGTTGGAGCCAAAAGTTAAAGCCTTGGAAGCGCTTGACAAGGAGCCTGCAATTTCA ACAGTGGAAGAGCTGACTCCTGCAGATTCAGCTTTGAAACAGAGACAGACTACTGCTATGTTGGGAACAAAGAGGGACAT AGAGAGGAATAGAAGGAAGGACGCTCTCAGACAGGGTGATGATCCTGAATCTCAGAAGAATCTGGGTGAAAAAGTTAAGG ACGTTGCCGTTAACAAAGAGGCTCTTGAAAGTACAGAAGTTCATGTTTCTCGTAATTTACCACCATATGATGCTTCTGCA ACTACACCTCAGGAGGCTTATATATTGGATAAAATCATCCCTAAAAAAGAATGGGAATACCTTGAAGACATTTATGATAT GTTGCAACTTGGGGAGGAAGCAGACTTCAGTGCTTATCCAACTTTTATTTCCAACAGGATAGCAAGGTTAAAGGGGATTA AGGATGAGGCGGAAAAGAAGAAGATGTCTTGCATATTCTCATACCTCAATCATCTTATAAAGTTTAAAGATCAGCACACC ATGCAGGGTGTTTCCTCTGCAAAGAGCCATAAAATCCCCCCCATTCTGCGTTATAAATTTTCATCAATGTTTGGTGCTAC TGAATCAAGAAGGCTGCCTAACGATGAGTTGAATCTGCTTATTTGTTATGTCCTGGTGCTGACTCTTTTCTCTGATGAAT TCCGAACTGACTACACAGATATATCAAAGGATCTGAGGATGAGTGTATTGCTCGTGAGACAACATTATTCGGATTTGGGT TGCAAATTTCTAAGCCAGAATAAAATTTCCTATGCAACGCTTCCTGTCCCTCTTAAGTTTCCTGATTCGAAGCAAAGGAA GCGAAAAAGATAG
Protein sequence (LotjaGi6g1v0236100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDSESEDTKSQRESLSKKIKSKKNKKKQDDTSSETINAKVQVVPENPNKTSPIIGYFPSGFDPLKSYGSSSGPTGFQLYR HRNMTKRLQLVVSPAGAPVEFVGTSYTGEAAAGHRAMYALGVFDKKAQTLKVVPIAANKIFRLEPKVKALEALDKEPAIS TVEELTPADSALKQRQTTAMLGTKRDIERNRRKDALRQGDDPESQKNLGEKVKDVAVNKEALESTEVHVSRNLPPYDASA TTPQEAYILDKIIPKKEWEYLEDIYDMLQLGEEADFSAYPTFISNRIARLKGIKDEAEKKKMSCIFSYLNHLIKFKDQHT MQGVSSAKSHKIPPILRYKFSSMFGATESRRLPNDELNLLICYVLVLTLFSDEFRTDYTDISKDLRMSVLLVRQHYSDLG CKFLSQNKISYATLPVPLKFPDSKQRKRKR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 17 | 17 | - | – | |
| MobiDBLite | 1 | 44 | 44 | - | – | |
| Coils | 5 | 25 | 21 | - | – | |
| PANTHER | 33 | 430 | 398 | 1.0E-111 | ||
| Pfam | 74 | 428 | 355 | 2.6E-50 | ||
| MobiDBLite | 176 | 210 | 35 | - | – | |
| MobiDBLite | 182 | 210 | 29 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Cellular component | Host cell nucleus | A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction. |
Expression pattern of LotjaGi6g1v0236100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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