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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012334
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 423 results. Now displaying 1 of 9 with 50 rows per page. This search has taken 5.664s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0004749.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Vitis vinifera] gi|359479963|ref|XP_002268492.2| chr0 1761412 1762646 +
2 domain predictions
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Lj0g3v0008659.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 36-like [Glycine max] gi|356506381|ref|XP_003521962.1| chr0 3510033 3514365 +
2 domain predictions
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Lj0g3v0067429.1
n.a. PREDICTED: probable polygalacturonase At3g15720-like [Glycine max] gi|356544252|ref|XP_003540568.1| chr0 23941548 23942769 +
2 domain predictions
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Lj0g3v0067819.2
n.a. PREDICTED: F-box protein SKIP5-like [Cicer arietinum] gi|502179825|ref|XP_004516505.1| chr0 24141646 24145029 -
2 domain predictions
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Lj0g3v0081679.1
n.a. PREDICTED: probable pectate lyase 8-like [Glycine max] gi|356540726|ref|XP_003538836.1| chr0 31963125 31964510 +
2 domain predictions
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Lj0g3v0082119.1
n.a. PREDICTED: pectinesterase QRT1-like [Cicer arietinum] gi|502099523|ref|XP_004491500.1| chr0 32195437 32197099 +
2 domain predictions
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Lj0g3v0082129.1
n.a. PREDICTED: pectinesterase QRT1-like [Glycine max] gi|356552622|ref|XP_003544663.1| chr0 32195437 32197099 +
2 domain predictions
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Lj0g3v0083289.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 32893415 32902115 +
2 domain predictions
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Lj0g3v0083289.2
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 32893415 32896729 +
2 domain predictions
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Lj0g3v0096559.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356530824|ref|XP_003533980.1| chr0 40742767 40743658 -
2 domain predictions
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Lj0g3v0097909.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356535839|ref|XP_003536450.1| chr0 41418992 41421500 +
2 domain predictions
 –
Lj0g3v0099739.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Cicer arietinum] gi|502180962|ref|XP_004516727.1| chr0 42320025 42320836 -
2 domain predictions
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Lj0g3v0099889.1
n.a. PREDICTED: LOW QUALITY PROTEIN: probable pectinesterase 53-like [Vitis vinifera] gi|359479965|ref|XP_003632380.1| chr0 42360892 42363435 -
2 domain predictions
 –
Lj0g3v0125459.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 56389692 56392095 -
2 domain predictions
 –
Lj0g3v0126579.1
n.a. Pectinesterase [Medicago truncatula] gi|357442451|ref|XP_003591503.1| chr0 56950091 56951820 +
2 domain predictions
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Lj0g3v0135849.1
n.a. PREDICTED: polygalacturonase-like [Glycine max] gi|356503157|ref|XP_003520378.1| chr0 62506529 62508568 +
2 domain predictions
 –
Lj0g3v0161859.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 7-like [Glycine max] gi|356570974|ref|XP_003553657.1| chr0 76215483 76217588 +
2 domain predictions
 –
Lj0g3v0161879.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Glycine max] gi|356501892|ref|XP_003519757.1| chr0 76220183 76226189 +
2 domain predictions
 –
Lj0g3v0162659.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356535839|ref|XP_003536450.1| chr0 76792278 76793024 -
2 domain predictions
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Lj0g3v0171819.1
n.a. Pectinesterase [Medicago truncatula] gi|357495001|ref|XP_003617789.1| chr0 82379413 82380165 -
2 domain predictions
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Lj0g3v0188379.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum] gi|502150638|ref|XP_004508051.1| chr0 92023840 92026513 -
2 domain predictions
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Lj0g3v0198719.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356535839|ref|XP_003536450.1| chr0 97120346 97122193 +
2 domain predictions
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Lj0g3v0199099.1
n.a. PREDICTED: pectinesterase 2-like [Glycine max] gi|356496344|ref|XP_003517028.1| chr0 97523901 97526755 +
2 domain predictions
 –
Lj0g3v0199109.1
n.a. PREDICTED: pectinesterase 2-like [Glycine max] gi|356496344|ref|XP_003517028.1| chr0 97526813 97527534 +
2 domain predictions
 –
Lj0g3v0200679.1
n.a. Pectinesterase [Medicago truncatula] gi|357456165|ref|XP_003598363.1| chr0 98991608 98993968 -
2 domain predictions
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Lj0g3v0204259.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Cicer arietinum] gi|502180962|ref|XP_004516727.1| chr0 101377446 101382747 -
2 domain predictions
 –
Lj0g3v0207539.1
n.a. polygalacturonase gene specific to nodule precursor [Glycine max] gi|351722164|ref|NP_001238514.1| chr0 103725910 103726425 -
2 domain predictions
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Lj0g3v0207779.1
n.a. PREDICTED: probable pectate lyase 16-like [Glycine max] gi|356532305|ref|XP_003534714.1| chr0 103899764 103900949 +
2 domain predictions
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Lj0g3v0212519.1
n.a. PREDICTED: polygalacturonase At1g48100-like [Glycine max] gi|356532486|ref|XP_003534803.1| chr0 107267401 107270704 -
2 domain predictions
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Lj0g3v0212809.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356532851|ref|XP_003534983.1| chr0 107397418 107400342 +
2 domain predictions
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Lj0g3v0212839.1
n.a. Pectinesterase [Medicago truncatula] gi|124360330|gb|ABN08343.1| chr0 107400345 107401363 +
2 domain predictions
 –
Lj0g3v0216299.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 39-like [Glycine max] gi|356570976|ref|XP_003553658.1| chr0 109830246 109834213 -
2 domain predictions
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Lj0g3v0216319.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 41-like [Glycine max] gi|356572750|ref|XP_003554529.1| chr0 109842949 109845276 +
2 domain predictions
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Lj0g3v0222439.1
n.a. Pectin methylesterase 31 isoform 1 [Theobroma cacao] gi|508711640|gb|EOY03537.1| chr0 114444431 114449905 +
2 domain predictions
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Lj0g3v0228089.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356534105|ref|XP_003535598.1| chr0 117904898 117908622 +
2 domain predictions
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Lj0g3v0243059.1
n.a. Polygalacturonase-like protein [Medicago truncatula] gi|357479389|ref|XP_003609980.1| chr0 126063265 126065414 +
2 domain predictions
 –
Lj0g3v0243179.1
n.a. PREDICTED: probable polygalacturonase At3g15720-like [Cicer arietinum] gi|502080783|ref|XP_004486675.1| chr0 126110378 126115429 +
2 domain predictions
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Lj0g3v0251369.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356560736|ref|XP_003548644.1| chr0 130392764 130396752 +
2 domain predictions
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Lj0g3v0254969.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Cicer arietinum] gi|502150638|ref|XP_004508051.1| chr0 132385588 132387835 -
2 domain predictions
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Lj0g3v0256399.1
n.a. PREDICTED: pectinesterase QRT1-like [Cicer arietinum] gi|502099523|ref|XP_004491500.1| chr0 133129915 133131851 +
2 domain predictions
 –
Lj0g3v0260209.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 60-like [Glycine max] gi|356510306|ref|XP_003523880.1| chr0 135207705 135208656 -
2 domain predictions
 –
Lj0g3v0261729.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Glycine max] gi|356544259|ref|XP_003540571.1| chr0 135644762 135646446 +
2 domain predictions
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Lj0g3v0261729.2
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Glycine max] gi|356544259|ref|XP_003540571.1| chr0 135644762 135646431 +
2 domain predictions
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Lj0g3v0270719.1
n.a. n.a. chr0 140211381 140220669 +
2 domain predictions
 –
Lj0g3v0270719.2
n.a. n.a. chr0 140211381 140220669 +
2 domain predictions
 –
Lj0g3v0270749.1
n.a. PREDICTED: probable pectinesterase/pectinesterase inhibitor 33-like [Cicer arietinum] gi|502127325|ref|XP_004499656.1| chr0 140226508 140228997 -
2 domain predictions
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Lj0g3v0271229.1
n.a. PREDICTED: pectinesterase QRT1-like [Glycine max] gi|356499437|ref|XP_003518547.1| chr0 140485973 140490235 -
2 domain predictions
 –
Lj0g3v0276749.1
n.a. PREDICTED: probable polygalacturonase-like [Glycine max] gi|356501839|ref|XP_003519731.1| chr0 143601777 143605580 -
2 domain predictions
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Lj0g3v0284379.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356532845|ref|XP_003534980.1| chr0 147549060 147549929 -
2 domain predictions
 –
Lj0g3v0284389.1
n.a. PREDICTED: pectinesterase/pectinesterase inhibitor PPE8B-like [Glycine max] gi|356532851|ref|XP_003534983.1| chr0 147550199 147553274 -
2 domain predictions
 –