Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0161879.1

Overview

Field Value
Gene ID Lj0g3v0161879
Transcript ID Lj0g3v0161879.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable pectinesterase/pectinesterase inhibitor 40-like [Glycine max] gi|356501892|ref|XP_003519757.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 6 6 – –
PANTHER
PTHR31707
3 559 557 0 –
PANTHER
PTHR31707:SF25
3 559 557 0 –
TMHMM
TMhelix
7 26 20 – –
Phobius
TRANSMEMBRANE
7 26 20 – –
TIGRFAM
TIGR01614
19 200 182 1.40E-23
IPR006501
Phobius
NON_CYTOPLASMIC_DOMAIN
27 559 533 – –
SMART
SM00856
44 197 154 2.60E-32
IPR006501
Pfam
PF04043
49 197 149 5.60E-25
IPR006501
SUPERFAMILY
SSF101148
50 201 152 8.11E-28
IPR006501
Gene3D
G3DSA:1.20.140.40
50 202 153 9.60E-32
IPR006501
CDD
cd15798
51 202 152 7.85E-38 –
SUPERFAMILY
SSF51126
244 556 313 4.35E-119
IPR011050
Gene3D
G3DSA:2.160.20.10
244 554 311 2.90E-125
IPR012334
Pfam
PF01095
247 543 297 1.30E-146
IPR000070
ProSitePatterns
PS00503
391 400 10 –
IPR033131

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004857
Molecular function Enzyme inhibitor activity Binds to and stops, prevents or reduces the activity of an enzyme.
Subterm of
GO:0030599
Molecular function Pectinesterase activity Catalysis of the reaction: pectin + n H2O = n methanol + pectate.
Subterm of
GO:0042545
Biological process Cell wall modification The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj0g3v0161879.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0161879.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.