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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0243179 |
| Transcript ID | Lj0g3v0243179.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable polygalacturonase At3g15720-like [Cicer arietinum] gi|502080783|ref|XP_004486675.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 30 | 30 | – | – | |
| Phobius | 1 | 13 | 13 | – | – | |
| Phobius | 1 | 30 | 30 | – | – | |
| PANTHER | 8 | 410 | 403 | 1.30E-237 | – | |
| PANTHER | 8 | 410 | 403 | 1.30E-237 | – | |
| Phobius | 14 | 25 | 12 | – | – | |
| Gene3D | 19 | 408 | 390 | 6.10E-114 | ||
| SUPERFAMILY | 21 | 408 | 388 | 9.32E-109 | ||
| Phobius | 26 | 30 | 5 | – | – | |
| Phobius | 31 | 410 | 380 | – | – | |
| Pfam | 65 | 397 | 333 | 2.80E-85 | ||
| SMART | 192 | 218 | 27 | 910 | ||
| SMART | 219 | 240 | 22 | 760 | ||
| ProSitePatterns | 249 | 262 | 14 | – | ||
| SMART | 272 | 293 | 22 | 61 | ||
| SMART | 301 | 322 | 22 | 5600 | ||
| SMART | 368 | 389 | 22 | 9300 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Polygalacturonase activity | Catalysis of the random hydrolysis of (1->4)-alpha-D-galactosiduronic linkages in pectate and other galacturonans. | ||
| Biological process | Carbohydrate metabolic process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. |
Expression pattern of Lj0g3v0243179.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0243179.1, powered by CORGI.
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