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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR012392
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 6.034s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0065089.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] gi|356535335|ref|XP_003536202.1| chr0 22620129 22623120 -
3 domain predictions
3 GO terms
Lj0g3v0078429.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 7-like [Glycine max] gi|356557495|ref|XP_003547051.1| chr0 30186893 30187987 +
2 domain predictions
3 GO terms
Lj0g3v0216389.1
n.a. 3-ketoacyl-CoA synthase [Medicago truncatula] gi|357472603|ref|XP_003606586.1| chr0 109893009 109895188 +
3 domain predictions
3 GO terms
Lj0g3v0220359.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 12-like [Glycine max] gi|356550239|ref|XP_003543495.1| chr0 112806946 112809060 -
3 domain predictions
3 GO terms
Lj0g3v0241719.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 5-like [Glycine max] gi|356574442|ref|XP_003555356.1| chr0 125448578 125449989 -
2 domain predictions
3 GO terms
Lj0g3v0246159.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 4-like [Cicer arietinum] gi|502149248|ref|XP_004507452.1| chr0 127501504 127503203 +
2 domain predictions
3 GO terms
Lj0g3v0324009.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 4-like [Vitis vinifera] gi|359475340|ref|XP_003631663.1| chr0 169299962 169302625 +
3 domain predictions
3 GO terms
Lj1g3v1798580.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 10-like [Glycine max] gi|356507127|ref|XP_003522322.1| chr1 21648839 21652690 +
3 domain predictions
3 GO terms
Lj1g3v1798600.1
n.a. beta-ketoacyl-CoA synthase [Arabidopsis thaliana] gi|62318951|dbj|BAD94049.1| chr1 21652791 21653054 +
2 domain predictions
3 GO terms
Lj1g3v1914960.1
n.a. beta-ketoacyl-coa synthase family protein [Populus trichocarpa] gi|224089128|ref|XP_002308642.1| chr1 22788959 22791028 -
3 domain predictions
3 GO terms
Lj1g3v4667830.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 5-like [Glycine max] gi|356574442|ref|XP_003555356.1| chr1 55296511 55298940 +
3 domain predictions
3 GO terms
Lj1g3v5060470.1
n.a. 3-ketoacyl-CoA synthase [Medicago truncatula] gi|357512625|ref|XP_003626601.1| chr1 61818763 61820797 +
3 domain predictions
3 GO terms
Lj2g3v0856560.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 10-like [Glycine max] gi|356507127|ref|XP_003522322.1| chr2 13307903 13311754 -
3 domain predictions
3 GO terms
Lj2g3v1154110.1
n.a. 3-ketoacyl-CoA synthase [Arachis hypogaea] gi|269854053|gb|ACZ51240.1| chr2 18155943 18157976 -
3 domain predictions
3 GO terms
Lj2g3v1199860.1
n.a. Fatty acid elongase 3-ketoacyl-CoA synthase [Medicago truncatula] gi|357497433|ref|XP_003619005.1| chr2 19129944 19130560 -
2 domain predictions
3 GO terms
Lj3g3v0170760.1
n.a. n.a. chr3 1203886 1207573 +
3 domain predictions
3 GO terms
Lj3g3v0170770.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 4-like [Cicer arietinum] gi|502149248|ref|XP_004507452.1| chr3 1205142 1207607 -
3 domain predictions
3 GO terms
Lj3g3v3363310.1
n.a. CM0216.300.nc [Lotus japonicus] gi|164564732|dbj|BAF98214.1| chr3 41366602 41368832 -
3 domain predictions
3 GO terms
Lj4g3v1812470.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] gi|356511628|ref|XP_003524525.1| chr4 25530420 25533437 +
3 domain predictions
3 GO terms
Lj5g3v0106070.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 4-like [Glycine max] gi|356562355|ref|XP_003549437.1| chr5 922089 924207 +
3 domain predictions
3 GO terms
Lj5g3v1207760.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] gi|356535335|ref|XP_003536202.1| chr5 19521233 19521848 +
2 domain predictions
3 GO terms
Lj5g3v1207770.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Cicer arietinum] gi|502116381|ref|XP_004495403.1| chr5 19521795 19523336 +
2 domain predictions
3 GO terms
Lj5g3v1207790.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Glycine max] gi|356574783|ref|XP_003555524.1| chr5 19523283 19524381 +
2 domain predictions
3 GO terms
Lj5g3v2203980.1
n.a. 3-ketoacyl-CoA synthase [Arachis hypogaea] gi|269854053|gb|ACZ51240.1| chr5 31840119 31842270 -
3 domain predictions
3 GO terms
Lj5g3v2288650.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 21-like [Cicer arietinum] gi|502121440|ref|XP_004497320.1| chr5 33321322 33326174 +
3 domain predictions
3 GO terms
Lj5g3v2288650.2
n.a. PREDICTED: 3-ketoacyl-CoA synthase 21-like [Cicer arietinum] gi|502121440|ref|XP_004497320.1| chr5 33321322 33323725 +
3 domain predictions
3 GO terms
Lj5g3v2288660.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 21-like [Glycine max] gi|356536510|ref|XP_003536780.1| chr5 33321322 33323850 +
2 domain predictions
3 GO terms
Lj6g3v0000160.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 11-like [Cicer arietinum] gi|502116381|ref|XP_004495403.1| chr6 63710 65251 -
2 domain predictions
3 GO terms
Lj6g3v1464000.1
n.a. PREDICTED: probable 3-ketoacyl-CoA synthase 20-like [Glycine max] gi|356558171|ref|XP_003547381.1| chr6 17186870 17188024 +
2 domain predictions
3 GO terms
Lj6g3v2019780.1
n.a. PREDICTED: 3-ketoacyl-CoA synthase 10-like [Cicer arietinum] gi|502077924|ref|XP_004485786.1| chr6 23957755 23959931 -
3 domain predictions
3 GO terms
LotjaGi1g1v0373200.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26250.1 3-ketoacyl-CoA synthase 10; Swiss-Prot: sp|Q570B4|KCS10_ARATH 3-ketoacyl-CoA synthase 10; TrEMBL-Plants: tr|A0A1J7H3X6|A0A1J7H3X6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0373200 LjG1.1_chr1 85142486 85147192 +
3 domain predictions
3 GO terms
LotjaGi1g1v0373200.2
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26250.1 3-ketoacyl-CoA synthase 10; Swiss-Prot: sp|Q570B4|KCS10_ARATH 3-ketoacyl-CoA synthase 10; TrEMBL-Plants: tr|A0A1J7H3X6|A0A1J7H3X6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0373200 LjG1.1_chr1 85142540 85146880 +
3 domain predictions
3 GO terms
LotjaGi1g1v0373200.3
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26250.1 3-ketoacyl-CoA synthase 10; Swiss-Prot: sp|Q570B4|KCS10_ARATH 3-ketoacyl-CoA synthase 10; TrEMBL-Plants: tr|A0A1J7H3X6|A0A1J7H3X6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0373200 LjG1.1_chr1 85142713 85146880 +
3 domain predictions
3 GO terms
LotjaGi1g1v0387500.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|B9H9R8|B9H9R8_POPTR 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi1g1v0387500 LjG1.1_chr1 87070451 87071974 -
3 domain predictions
3 GO terms
LotjaGi1g1v0437300.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT1G19440.1 3-ketoacyl-CoA synthase 4; Swiss-Prot: sp|Q9LN49|KCS4_ARATH 3-ketoacyl-CoA synthase 4; TrEMBL-Plants: tr|M5VMR3|M5VMR3_PRUPE 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi1g1v0437300 LjG1.1_chr1 93200934 93204041 -
2 domain predictions
3 GO terms
LotjaGi1g1v0796000.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT1G01120.1 3-ketoacyl-CoA synthase 1; Swiss-Prot: sp|Q9MAM3|KCS1_ARATH 3-ketoacyl-CoA synthase 1; TrEMBL-Plants: tr|Q2HTC9|Q2HTC9_MEDTR 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi1g1v0796000 LjG1.1_chr1 136676119 136678171 +
3 domain predictions
3 GO terms
LotjaGi2g1v0100000.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT1G04220.1 3-ketoacyl-CoA synthase 2; Swiss-Prot: sp|Q5XEP9|KCS2_ARATH 3-ketoacyl-CoA synthase 2; TrEMBL-Plants: tr|I1K220|I1K220_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi2g1v0100000 LjG1.1_chr2 33297886 33300609 +
3 domain predictions
3 GO terms
LotjaGi2g1v0276500.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT1G68530.1 3-ketoacyl-CoA synthase 6; Swiss-Prot: sp|Q9XF43|KCS6_ARATH 3-ketoacyl-CoA synthase 6; TrEMBL-Plants: tr|A0A151RPM4|A0A151RPM4_CAJCA 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi2g1v0276500 LjG1.1_chr2 74834090 74836236 -
3 domain predictions
3 GO terms
LotjaGi2g1v0367500.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G28630.1 3-ketoacyl-CoA synthase 12; Swiss-Prot: sp|Q9SIB2|KCS12_ARATH 3-ketoacyl-CoA synthase 12; TrEMBL-Plants: tr|G7JSN8|G7JSN8_MEDTR 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi2g1v0367500 LjG1.1_chr2 86497249 86501160 -
3 domain predictions
3 GO terms
LotjaGi3g1v0278600.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G28630.1 3-ketoacyl-CoA synthase 12; Swiss-Prot: sp|Q9SIB2|KCS12_ARATH 3-ketoacyl-CoA synthase 12; TrEMBL-Plants: tr|A0A151SUW9|A0A151SUW9_CAJCA 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi3g1v0278600 LjG1.1_chr3 55364491 55366927 +
3 domain predictions
3 GO terms
LotjaGi3g1v0508600.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT1G19440.1 3-ketoacyl-CoA synthase 4; Swiss-Prot: sp|Q9LN49|KCS4_ARATH 3-ketoacyl-CoA synthase 4; TrEMBL-Plants: tr|G7JHB4|G7JHB4_MEDTR 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi3g1v0508600 LjG1.1_chr3 92578613 92582195 +
3 domain predictions
3 GO terms
LotjaGi3g1v0510500.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|B0BLH8|B0BLH8_LOTJA 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi3g1v0510500 LjG1.1_chr3 92762066 92764737 -
3 domain predictions
3 GO terms
LotjaGi3g1v0510500.2
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|B0BLH8|B0BLH8_LOTJA 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi3g1v0510500 LjG1.1_chr3 92762502 92764034 -
3 domain predictions
3 GO terms
LotjaGi4g1v0266000.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|I1K1C8|I1K1C8_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi4g1v0266000 LjG1.1_chr4 63108646 63111578 +
3 domain predictions
3 GO terms
LotjaGi4g1v0266000.2
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|I1K1C8|I1K1C8_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi4g1v0266000 LjG1.1_chr4 63108810 63111351 +
3 domain predictions
3 GO terms
LotjaGi4g1v0266000.3
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|I1K1C8|I1K1C8_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi4g1v0266000 LjG1.1_chr4 63109537 63111072 +
3 domain predictions
3 GO terms
LotjaGi5g1v0193100.1
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|I1LC39|I1LC39_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi5g1v0193100 LjG1.1_chr5 48729185 48732497 +
3 domain predictions
3 GO terms
LotjaGi5g1v0193100.2
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|I1LC39|I1LC39_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi5g1v0193100 LjG1.1_chr5 48729593 48732469 +
3 domain predictions
3 GO terms
LotjaGi5g1v0193100.3
n.a. 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|I1LC39|I1LC39_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi5g1v0193100 LjG1.1_chr5 48729614 48732473 +
3 domain predictions
3 GO terms
LotjaGi5g1v0193100.4
n.a. 3-ketoacyl-CoA synthase; TAIR: AT1G04220.1 3-ketoacyl-CoA synthase 2; Swiss-Prot: sp|Q5XEP9|KCS2_ARATH 3-ketoacyl-CoA synthase 2; TrEMBL-Plants: tr|I1LC39|I1LC39_SOYBN 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi5g1v0193100 LjG1.1_chr5 48729963 48732374 +
2 domain predictions
3 GO terms