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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0387500 |
| Transcript ID | LotjaGi1g1v0387500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 3-ketoacyl-CoA synthase; TAIR: AT2G26640.1 3-ketoacyl-CoA synthase 11; Swiss-Prot: sp|O48780|KCS11_ARATH 3-ketoacyl-CoA synthase 11; TrEMBL-Plants: tr|B9H9R8|B9H9R8_POPTR 3-ketoacyl-CoA synthase; Found in the gene: LotjaGi1g1v0387500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87070451..87071974) extracted from Lotus japonicus Gifu genome v1.2.
ATGTCAGAATCAAACTCAAAAACTCCACTGATCCAATCTAAGCTTCCTGATATCAAACTATCTGTGAAATTGAAATACGT GAAGCTAGGCTACCACTACCTAATCACCCATGTAATGTTCCTGTTTTTCTCACCTCTTGTGTTCCTCATAGCAGCACATC TCTCTACATTTTCAGTCCAAGATCTGCATGATCTCTGGGACCATCTGCGCTACAATCTGATCTCCGCTGTCCTTTGCTCA GCTTTCCTAGTGTTCTTGTTAACCCTTTATTTCCTAACTCGTCCTCGGCCAGTTTACCTTGTTGATTTTTCATGCTTCAA GCCTGCAGATGCGCGCCCATGCACGAGGCAGATATTCATGGACTGTTCCAGTTCGACAGAAACTTTTACTGAGCAAAGCC TCGAGTTTCAGCGCAAGGTTCTGGAAAGATCTGGACTTGGTGAGTCAACTTACCTCCCTGAAGCTGTTCTAAGAGTTCCT CCAAACCCATCAATGGCAGAAGCCAGGAAGGAAGCTGAGGCTGTCATGTTTGGTGCTGTTGATGAGCTATTTGAGAAGAC AAGGGTGAAACCAAAGGACATTGAAATTCTTATTGTAAATTGTAGCTTGTTTAATCCAACACCATCCTTGTCTGCAATGG TTATTAATCATTACAAGCTTCGTGGGAATATTCTGAGTTACAATCTAGGGGGTATGGGTTGTAGTGCTGGTTTGATTTCT ATTGATCTTGCCAAGGATCTTCTCCAGGTCCACCCAAATTCTTATGCCCTGGTCATTAGCATGGAAAATATCACCTTGAA CTGGTACTTTGGGAACGATAGATCCATGCTTGTTTCAAATTGTTTGTTCAGAATGGGAGGAGCTGCAATCTTACTTTCTA ACAAGAGATGGGATAGACGCCGATCTAAGTATCAGTTGGTTCACACTGTTAGGACTCACAAAGGGGCCGATGATAGGTGC TTCTCCTGTGTAACACAAAAAGAGGATTCCACAGGGAGCGTTGGTGTTTCTTTGTCAAGGGATCTCATGTCAGTGGCTGG GGATGCTTTGAAGACCAACATCACCACTCTGGGTCCTCTAGTGCTGCCAATGTCTGAACAATTGCTCTTTTTTGCCACCT TGGTTGCAAGAAAACTCTTCAAGATGAAAGTAAAACCTTATATCCCTGATTTTAAGTTGGCATTTGACCATTTCTGCATT CATGCCGGGGGAAGAGCAGTGCTGGATGAATTAGAGAGGAACCTCCAACTCACAGACTGGCACATGGAACCTTCAAGGAT GACCCTTTACAGGTTTGGCAACACTTCAAGTAGCTCGTTGTGGTTCGAATTGGCTTACGCTGAAGCCAAAGGGAGAATCA GAAAAGGCCATCAGTTGTGGCAAATTGGATTTGGATCCGGATTCAAGTGCAATAGTGTGGCTTGGAGGGCTCTAAGGAAG GTGAACCCAGCAAAGGAGAAGAATCCATGGATCAATGAAATTCACCAGTTCCCAGTTGATGTCCCCAAATTCTCTGCTAT CTAG
CDS sequence (LotjaGi1g1v0387500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTCAGAATCAAACTCAAAAACTCCACTGATCCAATCTAAGCTTCCTGATATCAAACTATCTGTGAAATTGAAATACGT GAAGCTAGGCTACCACTACCTAATCACCCATGTAATGTTCCTGTTTTTCTCACCTCTTGTGTTCCTCATAGCAGCACATC TCTCTACATTTTCAGTCCAAGATCTGCATGATCTCTGGGACCATCTGCGCTACAATCTGATCTCCGCTGTCCTTTGCTCA GCTTTCCTAGTGTTCTTGTTAACCCTTTATTTCCTAACTCGTCCTCGGCCAGTTTACCTTGTTGATTTTTCATGCTTCAA GCCTGCAGATGCGCGCCCATGCACGAGGCAGATATTCATGGACTGTTCCAGTTCGACAGAAACTTTTACTGAGCAAAGCC TCGAGTTTCAGCGCAAGGTTCTGGAAAGATCTGGACTTGGTGAGTCAACTTACCTCCCTGAAGCTGTTCTAAGAGTTCCT CCAAACCCATCAATGGCAGAAGCCAGGAAGGAAGCTGAGGCTGTCATGTTTGGTGCTGTTGATGAGCTATTTGAGAAGAC AAGGGTGAAACCAAAGGACATTGAAATTCTTATTGTAAATTGTAGCTTGTTTAATCCAACACCATCCTTGTCTGCAATGG TTATTAATCATTACAAGCTTCGTGGGAATATTCTGAGTTACAATCTAGGGGGTATGGGTTGTAGTGCTGGTTTGATTTCT ATTGATCTTGCCAAGGATCTTCTCCAGGTCCACCCAAATTCTTATGCCCTGGTCATTAGCATGGAAAATATCACCTTGAA CTGGTACTTTGGGAACGATAGATCCATGCTTGTTTCAAATTGTTTGTTCAGAATGGGAGGAGCTGCAATCTTACTTTCTA ACAAGAGATGGGATAGACGCCGATCTAAGTATCAGTTGGTTCACACTGTTAGGACTCACAAAGGGGCCGATGATAGGTGC TTCTCCTGTGTAACACAAAAAGAGGATTCCACAGGGAGCGTTGGTGTTTCTTTGTCAAGGGATCTCATGTCAGTGGCTGG GGATGCTTTGAAGACCAACATCACCACTCTGGGTCCTCTAGTGCTGCCAATGTCTGAACAATTGCTCTTTTTTGCCACCT TGGTTGCAAGAAAACTCTTCAAGATGAAAGTAAAACCTTATATCCCTGATTTTAAGTTGGCATTTGACCATTTCTGCATT CATGCCGGGGGAAGAGCAGTGCTGGATGAATTAGAGAGGAACCTCCAACTCACAGACTGGCACATGGAACCTTCAAGGAT GACCCTTTACAGGTTTGGCAACACTTCAAGTAGCTCGTTGTGGTTCGAATTGGCTTACGCTGAAGCCAAAGGGAGAATCA GAAAAGGCCATCAGTTGTGGCAAATTGGATTTGGATCCGGATTCAAGTGCAATAGTGTGGCTTGGAGGGCTCTAAGGAAG GTGAACCCAGCAAAGGAGAAGAATCCATGGATCAATGAAATTCACCAGTTCCCAGTTGATGTCCCCAAATTCTCTGCTAT CTAG
Protein sequence (LotjaGi1g1v0387500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSESNSKTPLIQSKLPDIKLSVKLKYVKLGYHYLITHVMFLFFSPLVFLIAAHLSTFSVQDLHDLWDHLRYNLISAVLCS AFLVFLLTLYFLTRPRPVYLVDFSCFKPADARPCTRQIFMDCSSSTETFTEQSLEFQRKVLERSGLGESTYLPEAVLRVP PNPSMAEARKEAEAVMFGAVDELFEKTRVKPKDIEILIVNCSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLIS IDLAKDLLQVHPNSYALVISMENITLNWYFGNDRSMLVSNCLFRMGGAAILLSNKRWDRRRSKYQLVHTVRTHKGADDRC FSCVTQKEDSTGSVGVSLSRDLMSVAGDALKTNITTLGPLVLPMSEQLLFFATLVARKLFKMKVKPYIPDFKLAFDHFCI HAGGRAVLDELERNLQLTDWHMEPSRMTLYRFGNTSSSSLWFELAYAEAKGRIRKGHQLWQIGFGSGFKCNSVAWRALRK VNPAKEKNPWINEIHQFPVDVPKFSAI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 14 | 506 | 493 | 0.0 | – | |
| PANTHER | 14 | 506 | 493 | 0.0 | ||
| PIRSF | 17 | 507 | 491 | 5.4E-231 | ||
| TMHMM | 29 | 51 | 23 | - | – | |
| Phobius | 29 | 51 | 23 | - | – | |
| Phobius | 52 | 70 | 19 | - | – | |
| Phobius | 71 | 92 | 22 | - | – | |
| TMHMM | 71 | 93 | 23 | - | – | |
| CDD | 80 | 475 | 396 | 4.16541E-145 | – | |
| SUPERFAMILY | 84 | 302 | 219 | 1.54E-61 | ||
| Pfam | 90 | 379 | 290 | 3.8E-145 | ||
| Phobius | 93 | 195 | 103 | - | – | |
| Gene3D | 108 | 477 | 370 | 4.1E-88 | ||
| Phobius | 196 | 218 | 23 | - | – | |
| Phobius | 219 | 223 | 5 | - | – | |
| Phobius | 224 | 241 | 18 | - | – | |
| Phobius | 242 | 252 | 11 | - | – | |
| Phobius | 253 | 270 | 18 | - | – | |
| Phobius | 271 | 275 | 5 | - | – | |
| Phobius | 276 | 293 | 18 | - | – | |
| SUPERFAMILY | 283 | 478 | 196 | 4.66E-36 | ||
| Phobius | 294 | 507 | 214 | - | – | |
| Pfam | 395 | 476 | 82 | 5.8E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | Fatty acid biosynthetic process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Transferase activity, transferring acyl groups other than amino-acyl groups | Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor). |
Expression pattern of LotjaGi1g1v0387500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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