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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR013057
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 242 results. Now displaying 1 of 5 with 50 rows per page. This search has taken 6.361s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0038529.1
n.a. PREDICTED: sodium-coupled neutral amino acid transporter 2-like [Cicer arietinum] gi|502154629|ref|XP_004509766.1| chr0 12528091 12532844 -
2 domain predictions
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Lj0g3v0054619.1
n.a. Amino acid transporter [Medicago truncatula] gi|357492901|ref|XP_003616739.1| chr0 17543141 17546947 -
2 domain predictions
 –
Lj0g3v0059409.1
n.a. PREDICTED: lysine histidine transporter 1-like [Glycine max] gi|356497299|ref|XP_003517498.1| chr0 19625993 19627026 -
2 domain predictions
 –
Lj0g3v0066529.1
n.a. Lysine histidine transporter-like protein [Medicago truncatula] gi|357483991|ref|XP_003612282.1| chr0 23470427 23473584 +
2 domain predictions
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Lj0g3v0066539.1
n.a. PREDICTED: lysine histidine transporter-like 8-like [Cicer arietinum] gi|502161666|ref|XP_004512243.1| chr0 23470427 23474230 +
2 domain predictions
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Lj0g3v0080869.1
n.a. PREDICTED: probable amino acid permease 7-like [Glycine max] gi|356569591|ref|XP_003552982.1| chr0 31443879 31449067 -
2 domain predictions
 –
Lj0g3v0088179.1
n.a. PREDICTED: probable amino acid permease 7-like [Glycine max] gi|356527198|ref|XP_003532199.1| chr0 35991918 35995861 -
2 domain predictions
 –
Lj0g3v0104819.1
n.a. PREDICTED: amino acid permease 1-like [Cicer arietinum] gi|502124279|ref|XP_004498458.1| chr0 44891268 44897907 +
2 domain predictions
 –
Lj0g3v0111579.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like isoform 2 [Glycine max] gi|356531772|ref|XP_003534450.1| chr0 48474195 48475297 -
2 domain predictions
 –
Lj0g3v0111589.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like isoform 1 [Glycine max] gi|356531770|ref|XP_003534449.1| chr0 48474858 48475297 -
2 domain predictions
 –
Lj0g3v0118859.1
n.a. PREDICTED: auxin transporter-like protein 1-like [Glycine max] gi|356568519|ref|XP_003552458.1| chr0 52522628 52527885 -
2 domain predictions
 –
Lj0g3v0169269.1
n.a. PREDICTED: amino acid permease 8-like [Glycine max] gi|356515637|ref|XP_003526505.1| chr0 80888224 80893062 +
2 domain predictions
 –
Lj0g3v0174619.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] gi|356498515|ref|XP_003518096.1| chr0 84260511 84267856 -
2 domain predictions
 –
Lj0g3v0188979.1
n.a. PREDICTED: sodium-coupled neutral amino acid transporter 4-like [Glycine max] gi|356550636|ref|XP_003543691.1| chr0 92395415 92395989 -
2 domain predictions
 –
Lj0g3v0196829.1
n.a. amino acid permease AAP3 [Vicia faba var]. minor] gi|15216028|emb|CAC51424.1| chr0 95997692 95999446 -
2 domain predictions
 –
Lj0g3v0199159.1
n.a. PREDICTED: sodium-coupled neutral amino acid transporter 1-like [Glycine max] gi|356573605|ref|XP_003554948.1| chr0 97564358 97568494 -
2 domain predictions
 –
Lj0g3v0203269.1
n.a. PREDICTED: LOW QUALITY PROTEIN: amino acid permease 2-like [Glycine max] gi|356541032|ref|XP_003538987.1| chr0 100739776 100743374 -
2 domain predictions
 –
Lj0g3v0233549.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Cicer arietinum] gi|502129425|ref|XP_004500299.1| chr0 120925076 120926791 -
2 domain predictions
 –
Lj0g3v0242199.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like [Cicer arietinum] gi|502147954|ref|XP_004506981.1| chr0 125656570 125666072 +
2 domain predictions
 –
Lj0g3v0246449.1
n.a. Proline transporter [Medicago truncatula] gi|357492515|ref|XP_003616546.1| chr0 127701108 127702332 +
2 domain predictions
 –
Lj0g3v0273309.1
n.a. Amino acid permease [Medicago truncatula] gi|357495243|ref|XP_003617910.1| chr0 141653338 141657434 +
2 domain predictions
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Lj0g3v0281149.1
n.a. PREDICTED: probable amino acid permease 7-like [Glycine max] gi|356566280|ref|XP_003551361.1| chr0 145763722 145766517 +
2 domain predictions
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Lj0g3v0281169.1
n.a. PREDICTED: probable amino acid permease 7-like [Glycine max] gi|356566280|ref|XP_003551361.1| chr0 145769692 145770255 +
2 domain predictions
 –
Lj0g3v0288109.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like isoform 2 [Glycine max] gi|356531772|ref|XP_003534450.1| chr0 149721083 149722274 +
2 domain predictions
 –
Lj0g3v0296399.1
n.a. PREDICTED: proline transporter 1-like [Cicer arietinum] gi|502137890|ref|XP_004503220.1| chr0 154021685 154024637 +
2 domain predictions
 –
Lj0g3v0296409.1
n.a. n.a. chr0 154021685 154027291 -
2 domain predictions
 –
Lj0g3v0304149.1
n.a. PREDICTED: auxin transporter-like protein 2-like [Glycine max] gi|356568064|ref|XP_003552233.1| chr0 158428953 158434613 -
2 domain predictions
 –
Lj0g3v0337819.1
n.a. PREDICTED: auxin transporter-like protein 4-like [Glycine max] gi|356504042|ref|XP_003520808.1| chr0 176933868 176940546 +
2 domain predictions
 –
Lj0g3v0344279.1
n.a. Proline transporter [Medicago truncatula] gi|357492515|ref|XP_003616546.1| chr0 180546131 180550730 -
2 domain predictions
 –
Lj0g3v0344279.2
n.a. Proline transporter [Medicago truncatula] gi|357492515|ref|XP_003616546.1| chr0 180546131 180550730 -
2 domain predictions
 –
Lj0g3v0361159.1
n.a. PREDICTED: auxin transporter-like protein 3-like [Glycine max] gi|356515856|ref|XP_003526613.1| chr0 190249139 190252538 +
2 domain predictions
 –
Lj0g3v0361409.1
n.a. PREDICTED: lysine histidine transporter-like 2-like [Glycine max] gi|356565252|ref|XP_003550856.1| chr0 190353327 190356670 -
2 domain predictions
 –
Lj0g3v0363919.1
n.a. PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] gi|356567943|ref|XP_003552174.1| chr0 192006587 192009994 -
2 domain predictions
 –
Lj0g3v0363929.1
n.a. PREDICTED: probable sodium-coupled neutral amino acid transporter 6-like [Glycine max] gi|356540026|ref|XP_003538492.1| chr0 192007120 192009994 -
2 domain predictions
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Lj1g3v0874320.1
n.a. amino acid permease AAP4 [Vicia faba var]. minor] gi|15216030|emb|CAC51425.1| chr1 11168785 11174742 +
2 domain predictions
 –
Lj1g3v1357930.1
n.a. amino acid transporter, partial [Pisum sativum] gi|61967946|gb|AAX56952.1| chr1 16236535 16239133 -
2 domain predictions
 –
Lj1g3v1357950.1
n.a. amino acid transporter, partial [Pisum sativum] gi|61967946|gb|AAX56952.1| chr1 16251352 16252121 -
2 domain predictions
 –
Lj1g3v1358990.1
n.a. amino acid transporter, partial [Pisum sativum] gi|61967946|gb|AAX56952.1| chr1 16262085 16267820 -
2 domain predictions
 –
Lj1g3v1358990.2
n.a. PREDICTED: amino acid permease 2-like isoform X1 [Cicer arietinum] gi|502137133|ref|XP_004502980.1| chr1 16268311 16273199 -
2 domain predictions
 –
Lj1g3v2094440.1
n.a. PREDICTED: amino acid permease 8-like [Glycine max] gi|356515637|ref|XP_003526505.1| chr1 24728388 24732778 +
2 domain predictions
 –
Lj1g3v2095460.1
n.a. PREDICTED: amino acid permease 1-like [Cicer arietinum] gi|502131882|ref|XP_004501134.1| chr1 24744461 24747729 +
2 domain predictions
 –
Lj1g3v2095750.1
n.a. PREDICTED: amino acid permease 6-like [Cicer arietinum] gi|502131713|ref|XP_004501076.1| chr1 24950090 24955132 -
2 domain predictions
 –
Lj1g3v2268420.1
n.a. PREDICTED: lysine histidine transporter-like 8-like [Glycine max] gi|356517948|ref|XP_003527647.1| chr1 26711895 26715360 -
2 domain predictions
 –
Lj1g3v2965850.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like isoform 1 [Glycine max] gi|356531770|ref|XP_003534449.1| chr1 33654037 33656450 +
2 domain predictions
 –
Lj1g3v2965870.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like isoform 2 [Glycine max] gi|356531772|ref|XP_003534450.1| chr1 33661111 33662550 +
2 domain predictions
 –
Lj1g3v3090480.1
n.a. PREDICTED: sodium-coupled neutral amino acid transporter 2-like [Glycine max] gi|356526579|ref|XP_003531894.1| chr1 35104445 35108404 -
2 domain predictions
 –
Lj1g3v3443960.1
n.a. PREDICTED: vacuolar amino acid transporter 1-like [Cicer arietinum] gi|502168474|ref|XP_004514396.1| chr1 39874672 39877285 +
2 domain predictions
 –
Lj1g3v3768290.1
n.a. PREDICTED: lysine histidine transporter 1-like [Glycine max] gi|356574036|ref|XP_003555159.1| chr1 43301111 43303456 +
2 domain predictions
 –
Lj1g3v3768290.2
n.a. PREDICTED: lysine histidine transporter 1-like [Glycine max] gi|356574036|ref|XP_003555159.1| chr1 43302060 43303456 +
2 domain predictions
 –
Lj1g3v3768310.1
n.a. LHT-type plant amino acid transporter 1.2 [Lotus japonicus] gi|332713917|gb|AEE98384.1| chr1 43306267 43311040 +
2 domain predictions
 –