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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR015916
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 56 results. Now displaying 1 of 2 with 50 rows per page. This search has taken 5.640s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0007409.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502126221|ref|XP_004499224.1| chr0 2886141 2888723 +
2 domain predictions
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Lj0g3v0055579.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g27150-like [Glycine max] gi|356558716|ref|XP_003547649.1| chr0 17962220 17963081 -
2 domain predictions
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Lj0g3v0057049.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] gi|356511684|ref|XP_003524553.1| chr0 18619009 18622036 +
2 domain predictions
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Lj0g3v0112629.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356494873|ref|XP_003516307.1| chr0 49086701 49088720 +
2 domain predictions
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Lj0g3v0170319.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502126221|ref|XP_004499224.1| chr0 81532475 81535057 +
2 domain predictions
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Lj0g3v0258809.1
n.a. PREDICTED: F-box/kelch-repeat protein At5g60570-like [Glycine max] gi|356550208|ref|XP_003543480.1| chr0 134378608 134380775 +
2 domain predictions
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Lj0g3v0258809.2
n.a. PREDICTED: F-box/kelch-repeat protein At5g60570-like [Glycine max] gi|356550208|ref|XP_003543480.1| chr0 134378608 134380775 +
2 domain predictions
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Lj0g3v0263689.1
n.a. n.a. chr0 136694644 136697366 +
2 domain predictions
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Lj0g3v0263699.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g74510-like [Glycine max] gi|356516772|ref|XP_003527067.1| chr0 136695088 136699610 -
2 domain predictions
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Lj0g3v0263709.1
n.a. n.a. chr0 136696334 136698107 +
2 domain predictions
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Lj0g3v0274619.1
n.a. n.a. chr0 142409389 142412266 +
2 domain predictions
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Lj0g3v0302029.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356515826|ref|XP_003526599.1| chr0 157051484 157054102 +
2 domain predictions
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Lj0g3v0354469.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP4-like isoform X1 [Cicer arietinum] gi|502157205|ref|XP_004510793.1| chr0 186685736 186688398 -
2 domain predictions
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Lj0g3v0358109.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356509640|ref|XP_003523554.1| chr0 188444569 188446221 +
2 domain predictions
 –
Lj1g3v1134080.1
n.a. PREDICTED: galactose oxidase-like [Cicer arietinum] gi|502131344|ref|XP_004500954.1| chr1 14064664 14065137 +
2 domain predictions
 –
Lj1g3v1218950.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP6-like [Cicer arietinum] gi|502136860|ref|XP_004502867.1| chr1 14808163 14810332 +
2 domain predictions
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Lj1g3v1798690.1
n.a. PREDICTED: F-box only protein 13-like [Glycine max] gi|356507137|ref|XP_003522327.1| chr1 21690396 21692836 -
2 domain predictions
 –
Lj1g3v2390160.1
n.a. Kelch-like protein [Medicago truncatula] gi|357506211|ref|XP_003623394.1| chr1 28158494 28160219 -
2 domain predictions
 –
Lj1g3v2390160.2
n.a. Kelch-like protein [Medicago truncatula] gi|357506211|ref|XP_003623394.1| chr1 28158815 28160219 -
2 domain predictions
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Lj1g3v3088390.1
n.a. F-box/kelch-repeat protein [Caragana korshinskii] gi|477382017|gb|AGI78244.1| chr1 35057628 35060730 -
2 domain predictions
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Lj1g3v3384760.1
n.a. PREDICTED: F-box/kelch-repeat protein At5g42350-like [Glycine max] gi|356508586|ref|XP_003523036.1| chr1 39007629 39010643 +
2 domain predictions
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Lj1g3v3466000.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g24760-like [Glycine max] gi|356524531|ref|XP_003530882.1| chr1 40268381 40272549 -
2 domain predictions
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Lj1g3v4446660.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max] gi|356504941|ref|XP_003521251.1| chr1 51902345 51903369 -
2 domain predictions
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Lj1g3v4446670.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP30-like [Glycine max] gi|356504941|ref|XP_003521251.1| chr1 51902780 51903369 -
2 domain predictions
 –
Lj1g3v4446700.1
n.a. Galactose oxidase/kelch repeat superfamily protein [Theobroma cacao] gi|508702814|gb|EOX94710.1| chr1 51903560 51906124 -
2 domain predictions
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Lj1g3v4446710.1
n.a. Galactose oxidase/kelch repeat superfamily protein [Theobroma cacao] gi|508702814|gb|EOX94710.1| chr1 51903560 51903924 -
2 domain predictions
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Lj1g3v4955530.1
n.a. PREDICTED: galactose oxidase-like [Glycine max] gi|356571163|ref|XP_003553749.1| chr1 60394834 60397298 -
2 domain predictions
 –
Lj2g3v0824730.1
n.a. Galactose oxidase [Medicago truncatula] gi|357520921|ref|XP_003630749.1| chr2 12931401 12932078 +
2 domain predictions
 –
Lj2g3v1277380.1
n.a. PREDICTED: F-box/kelch-repeat protein At3g23880-like [Cicer arietinum] gi|502078956|ref|XP_004486107.1| chr2 20264283 20265725 +
2 domain predictions
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Lj2g3v1296270.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP11-like isoform X1 [Cicer arietinum] gi|502093701|ref|XP_004490024.1| chr2 20738477 20742397 -
2 domain predictions
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Lj2g3v1339010.1
n.a. PREDICTED: galactose oxidase-like [Solanum lycopersicum] gi|460387424|ref|XP_004239377.1| chr2 21098766 21101268 -
2 domain predictions
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Lj2g3v1415080.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g23390-like [Cicer arietinum] gi|502092900|ref|XP_004489820.1| chr2 22277145 22278919 +
2 domain predictions
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Lj2g3v1549980.1
n.a. PREDICTED: F-box/kelch-repeat protein SKIP25-like [Cicer arietinum] gi|502162027|ref|XP_004512365.1| chr2 24474677 24476950 +
2 domain predictions
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Lj3g3v0139510.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g80440-like [Cicer arietinum] gi|502080902|ref|XP_004486716.1| chr3 1082032 1084046 +
2 domain predictions
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Lj3g3v2213650.1
n.a. PREDICTED: F-box only protein 6-like [Glycine max] gi|356522353|ref|XP_003529811.1| chr3 27446059 27447500 -
2 domain predictions
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Lj3g3v2248230.1
n.a. n.a. chr3 27838880 27843306 -
2 domain predictions
 –
Lj3g3v2385420.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356524860|ref|XP_003531046.1| chr3 29674140 29677369 +
2 domain predictions
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Lj4g3v0336950.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356524860|ref|XP_003531046.1| chr4 4242511 4243122 -
2 domain predictions
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Lj4g3v0338200.1
n.a. F-box/kelch-repeat protein [Medicago truncatula] gi|357445771|ref|XP_003593163.1| chr4 4298339 4300501 -
2 domain predictions
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Lj4g3v1629950.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g74510-like [Glycine max] gi|356516772|ref|XP_003527067.1| chr4 23897765 23903404 +
2 domain predictions
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Lj4g3v1629950.2
n.a. PREDICTED: F-box/kelch-repeat protein At1g74510-like [Glycine max] gi|356516772|ref|XP_003527067.1| chr4 23897765 23900264 +
2 domain predictions
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Lj4g3v1683210.1
n.a. Kelch-like protein [Medicago truncatula] gi|357506213|ref|XP_003623395.1| chr4 24414185 24415191 +
2 domain predictions
 –
Lj4g3v1877020.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] gi|356511684|ref|XP_003524553.1| chr4 25773175 25774446 +
2 domain predictions
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Lj4g3v2370480.2
n.a. PREDICTED: acyl-CoA-binding domain-containing protein 4-like [Glycine max] gi|356563867|ref|XP_003550179.1| chr4 32642746 32650367 +
2 domain predictions
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Lj4g3v2539170.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g67480-like [Glycine max] gi|356525146|ref|XP_003531188.1| chr4 34144324 34146909 -
2 domain predictions
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Lj4g3v2563540.1
n.a. PREDICTED: F-box only protein 6-like [Glycine max] gi|356540130|ref|XP_003538543.1| chr4 34314586 34318385 +
2 domain predictions
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Lj4g3v2603890.1
n.a. PREDICTED: F-box/kelch-repeat protein At1g55270-like [Cicer arietinum] gi|502140780|ref|XP_004504335.1| chr4 34965385 34969514 -
2 domain predictions
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Lj4g3v2603970.1
n.a. PREDICTED: F-box/kelch-repeat protein At2g44130-like [Cicer arietinum] gi|502140767|ref|XP_004504329.1| chr4 35001857 35003373 -
2 domain predictions
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Lj4g3v3060330.1
n.a. n.a. chr4 40783719 40785293 +
2 domain predictions
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Lj4g3v3060340.1
n.a. Galactose oxidase [Medicago truncatula] gi|357520921|ref|XP_003630749.1| chr4 40783789 40785293 -
2 domain predictions
 –