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Lj3g3v2385420.1

Overview

Field Value
Gene ID Lj3g3v2385420
Transcript ID Lj3g3v2385420.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/kelch-repeat protein At1g22040-like [Glycine max] gi|356524860|ref|XP_003531046.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24414:SF33
1 470 470 1.00E-263 –
PANTHER
PTHR24414
1 470 470 1.00E-263 –
ProSiteProfiles
PS50181
40 86 47 10.186
IPR001810
Gene3D
G3DSA:1.20.1280.50
42 76 35 1.80E-05 –
SUPERFAMILY
SSF81383
43 92 50 1.96E-06
IPR001810
Pfam
PF00646
43 82 40 2.50E-07
IPR001810
SMART
SM00256
46 86 41 2.60E-06
IPR001810
Gene3D
G3DSA:2.130.10.80
77 132 56 2.00E-42
IPR015916
SUPERFAMILY
SSF117281
95 127 33 1.28E-39 –
SUPERFAMILY
SSF117281
171 389 219 1.28E-39 –
Pfam
PF01344
171 216 46 2.40E-16
IPR006652
Gene3D
G3DSA:2.130.10.80
172 383 212 2.00E-42
IPR015916
SMART
SM00612
183 229 47 1.40E-13
IPR006652
Pfam
PF01344
219 269 51 3.80E-11
IPR006652
SMART
SM00612
230 282 53 0.0013
IPR006652

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v2385420.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2385420.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.