Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v1877020.1

Overview

Field Value
Gene ID Lj4g3v1877020
Transcript ID Lj4g3v1877020.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: F-box/kelch-repeat protein At1g55270-like [Glycine max] gi|356511684|ref|XP_003524553.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
39 62 24 – –
SUPERFAMILY
SSF81383
47 103 57 5.72E-07
IPR001810
PANTHER
PTHR24412:SF234
54 423 370 1.60E-279 –
PANTHER
PTHR24412
54 423 370 1.60E-279 –
Gene3D
G3DSA:1.20.1280.50
58 94 37 1.30E-05 –
Pfam
PF00646
63 98 36 5.60E-06
IPR001810
Gene3D
G3DSA:2.130.10.80
95 359 265 1.20E-43
IPR015916
SUPERFAMILY
SSF117281
116 362 247 1.44E-46 –
Pfam
PF01344
154 197 44 2.00E-04
IPR006652
SMART
SM00612
164 211 48 3.90E-07
IPR006652
Pfam
PF01344
200 247 48 1.90E-14
IPR006652
SMART
SM00612
212 260 49 2.80E-07
IPR006652

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 8

Expression data

Expression pattern

Expression pattern of Lj4g3v1877020.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1877020.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.