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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0348900 |
| Transcript ID | LotjaGi3g1v0348900.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Low PSII Accumulation 3; TAIR: AT1G73060.1 Low PSII Accumulation 3; Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|G7JEG6|G7JEG6_MEDTR Low PSII accumulation protein; Found in the gene: LotjaGi3g1v0348900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:72681046..72685559) extracted from Lotus japonicus Gifu genome v1.2.
CATTCGAAAAAATTGGTAAAATGACACATCATCATCCTATCCATCCTTCTCTTTGTAGTGCTTGTTGGTGGTGTGAGTGA GACTGTGAGTGCCACAGAAACACGATGGTGTTGTCCATGGCCATTTCATCTCTACCTCACAACTCCACCTTTCTCCACCC ACTCGCGCAGTTTCACTCTCCATCTCCATCTTCCTCTCAAACTCTCAGAAACCTCCCATTCAGACTCACAACCAGAATCC AAAGCGTTGGTGTTGGAAGAGAAGCTGCATCCTCACAACCAGGGTCAGGTCCTGATCCCAAGGCCGGTGTTTCCCTTTAC AAACCCAAATCCTATGAAGTTCTCGTCACTGATGCTGCCAAGTCCCTCGCTCTTGCTCTTCAAGATGGAACACTTCGCCT CGAGATTGATTTCCCGTATATACTACTCACTCGCTCTCAATTCATGTGGAATAGCTAGGATTTAGTTGTAGCTTTCATGG GGTGCCATTCTTTTACTGATTTTGTTCCCTTGGTTTTGTCTTTAGGCCTTTGCCCAGTAGCATATCTTCATATAAGGTAC TATTCTTTGATCTCAAGTTACTAATTATTGTCAATTTTGCTCATTCATTGCATGTAGGCTTGTTTCCAGAGAGTGTGCTT GTTAGAGAAATAATATAAAATCATTCATGTGGCACTTACCTAACAATTTAAGCTTTTGGGATAATTGGTTGCATGACATG GTATCAGAAAATCTATGACCATGCAGTTCAGAGTTCGATCCTTGCCGCCCCCAATTCTTCAAATAATATAAAATCATTCA TGTGGACTTATCCAACAACTTAAGCTTTTGGGATAATTGGTTGCTTGGCAGTACTAACTACTAATTCCCAAGTTAATAGG CTCACATTTTCAAATGATTGACAATCTGGTCGCGCTAACTACTAATTTCCAAGTTAGTAGGCTAAATTTAACATTTTCAA ATGATTGATAATCTGGTCGCGCGTGGTGTTAGTATTGACAGACAGTGCCTTGCCTTGGTCATGGATCATAACAAATTTTC ATTTTAGCTCTTTATACCTCAGTTCATCTTCTGCTGTTTTTTTTTATTAGCAGTATGTTTCAACATATTCGTATGTTTAG TTGTTTTTTATGTCCGAACTATATACTAGGCTAACTTTGATTTCTTGTTTCAACAAACTGTTCTATTCCATAGTTACTTG ACCTTTGTGAGGCATGCTTGTTTGAATATATAGCACATAATTTTCTCAAATTCCTAAATATTTCAAGGGGTCTTCAGATG ATTTCATTGATGCCAACATTCAACTTGCCCTGGCTGTTGTAAGAAAGCTCCAGGAGAAAAAGGAAACCAGAGCTTGCATA GTAAGAAGGCACATTCTTGTTTCCTTCCAAAGCAAGGACTTCTTTTCATGTACAATTTTTTCTCTCTTTCAGAGAAGATA TGATTACATTTGTGCCTTATTGTAGGTATTCCCTGATAAGCCGGAAAAGCGCCGAGCCTCTGAGTTGTTCAAAGCAGCTA TGGATTCGGTTATGAAAAATAACTCATTATGAATTTATCCCCCATTTGTTTCAACTTTTTACATGAAAACATCACTTAAT TTTGAAAAAAAATCTTTAATTTTTTTAGTGTTTATTTAAGCTTTTAAGAAAGATCTGAATTTGAGAAAAAATAGCTTCTG CTTAATGTAATCTCTGGAAAATAAATTATATTTTCACGTAATCCTAAAATCACTTTTTTTTAAAACCTTAAACAAATTTA TGACTTCTTTTAAAATTATGCCAGCAAATGATCACATCATTGGTAAATTTTGAAGTAGTTAAACTATTTATTTTCATGCT CTATTGGCATTAATTTTGAAGTGCATTTTTGTTTGGCTTCCAGATAGATGGCATTACCATAGGTTCCTTAGATGATGTCC CAGGAGGACCAATGACTTCATTTTTCAGATCTGTTAGGAGCACCCTTGACTTTGACTTTGAAGATGAGAATGAAGGTTAG TTCTGGGGAAAAAATGGCATTAGCGTAGCCATCTAAGTAATATCTTTTTTTCTACTTGGTAGTTACCATGTTCGAAACTT ATGGATGGCTATTCATTACATTATTCTTGAGATATATATTGGTTAAGCAGTGTTGCTTTGTAAAACATGTGAACGATGAA ATAATAATATTTTGACCATCTCGTTTCTTGTAAATGCAGGCCGTTGGCAGTCTAGTGAGCCTCCATCTCTCTATATATTC ATTAATTGCAGTACACGAGAACTTGGTTATATAGAGAAGTATGTGGTATGGTGTCTTTGCCATTAGAACCTTTGATGTGC TTATAAAACTTCATTCCAATCTTGGCTATCTTGGTCAGAATTGTTTATTTTTTGTTCATTGGTGATGAATTATGTGCAAT AATATATTATGGCTTGAGTTATTTCATTTGATTTTGGTTCAGCATATCTGCAACATATAGAGTTTAGTTTGGAAGTTTAT CCCTCATAGTAGAAAGGTCTTTGATGGTTAAACTTGACCATGGCTCTTGTTTTGATGGCCATTGTTGGCAAAATGTGTGA TAGATTCTTAATACCGATAAACAACTATCTGTGATCGAGTAGGATTTATTATGTACACTGACTTCACCTAGCTGTTTTAG TTTGATGCATATCTTCCATTGTTGCTGCTTGAATCTTGCAGGAAAAATTTGCTCCGTCAACACCAGCACTTCTATTCAAT CTTGAACTAGATACATTGCGGTATACATTTTACTCTTTTTGTTTTTGAGTATTCATGCATGCCTAAATCATTAACTACTT TATACACTGGTTACGTTTGAAGAGAATGATTATTGAATTTACAGTGCGGATTTAGGCCTTCTAGGCTTCCCACCCAAAGA TTTGCATTACCGCTTTCTTTCTCAATTCACTCCTGTGTTCTACATTCGGATAAGAGATTATTCAAAGGTACTTCTTCTTT ATTAAATGTTATCTGGATTATAATTTCTCAATAATAGGCATTGACTGTTATATTTTTCTGTTTTTAAGACAGTTGCAATA GCGCCTTATATTGTCAACTACAGTGGAGCTGTGTTTCGTCAGTACCCTGGTACAGCTATATATTCATACGTGTATCTGAA TATGCGTGTGCGTGTAGACACAATCACACCCCATATATCTCTATTTTTTCTATCTATTAATATTTGGTCACATATTATTA AAATTGATTATTAAGGTTATTAATTAGTTAATTTCTAAAACGAGAATGGATGCAAAGATGAGAAAGTTGTGGAGAAGTAT GATAAACTACTGCATTTTATACCAGTTTTTTAATATTAATATCAACCCTTACAAGAATGACCATATTTCCAGTTTTTCTA GCAAGTAGCAACATTAGATGATTTTTGATAAAAAGAAGAATGTGATTACATACTTCCCTTTGGAGCCGGGGACAACTTTT CTTATAATAAACCAACTAATTATTTATGGAAGTTGGAGTATGGCCATATTGTTCCTCTTACTTCTCATCAGTCTTTAAAT GTCCACACTATTGCTGTGGCCAACTCCATTGAGTTGATTGCTGAATGATCAAAATCTAGCTTTGTGGTCTACTGACTTTT TTGGAACATATTATATGGTTATTAAAGGTGGGATATCCATATCCACAAAAAAAAAACAGGGTTATCTAATAACAATTTAA AAAAGCCAGGATATCCATTCATACAATGGAGCTGGCACAAAGCATATTTAGCCAGCAGTTGATACCAGATATCCTGTAAT TTGTATTTGGTTTTCATATGACTAGTATACCTTTATTTGCAAACGATATGGGTAATGCACTAAATTTTCTTCCAAAACTG TTCAGGTCCTTGGCAGGTGATGCTTAAACAAGCAGATGGCTCTTTTGCTTGCATAGCAGAGAGTGCAACCCGCTTCACCC TTGGTGAAGTAAATTCATAAACTTCACCTCATTTGCTTATTAACTGGAAATACTTTCATATTAATCTGTTGACTTATCTA GGCCAAAGAAGAATTGTTAAGAGTCCTGGGACTTCAAGAAGAAGAGGGAAGCTCTCTACAATTTCTTCGAAGAGGCTACA AGGTTTTCTCTCAGTTAGCTTAAGTTTCTGTTAATTTGCCTACTTGTTTCTTGGGCATTGAGTCTTCAAATTCTTTATAA ATCTGTTGCATTATCGTGTAATATTGCAGGCAAGCACGTGGTGGGAAGAGGATTCTGATTTGGAATTATCTTCTGCATGG CGGAATTGAGTAGTACACTGAAGAGTATAGGTTGTGTCTTTTACAGCATCCTCATGTGGTGGTCATTGAATGCTTGCATA CAGTAAAGGAAGGCATTTCCCACTGAACCACCCAATTTTTATTTTATGTTATTTTAATATTCCTTAATGTAATATTTTCG CCTTCTTTCTTCCCCTTTCAGTTTGAATGGATGTGATCCATTTTGACAAAGAAATATGAGGACTTAGTAAACTCAATTTG TACATCAGCTTGGAATGCAGCATATTATTTGTTT
CDS sequence (LotjaGi3g1v0348900.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTGTCCATGGCCATTTCATCTCTACCTCACAACTCCACCTTTCTCCACCCACTCGCGCAGTTTCACTCTCCATC TCCATCTTCCTCTCAAACTCTCAGAAACCTCCCATTCAGACTCACAACCAGAATCCAAAGCGTTGGTGTTGGAAGAGAAG CTGCATCCTCACAACCAGGGTCAGGTCCTGATCCCAAGGCCGGTGTTTCCCTTTACAAACCCAAATCCTATGAAGTTCTC GTCACTGATGCTGCCAAGTCCCTCGCTCTTGCTCTTCAAGATGGAACACTTCGCCTCGAGATTGATTTCCCGCCTTTGCC CAGTAGCATATCTTCATATAAGGGGTCTTCAGATGATTTCATTGATGCCAACATTCAACTTGCCCTGGCTGTTGTAAGAA AGCTCCAGGAGAAAAAGGAAACCAGAGCTTGCATAGTATTCCCTGATAAGCCGGAAAAGCGCCGAGCCTCTGAGTTGTTC AAAGCAGCTATGGATTCGATAGATGGCATTACCATAGGTTCCTTAGATGATGTCCCAGGAGGACCAATGACTTCATTTTT CAGATCTGTTAGGAGCACCCTTGACTTTGACTTTGAAGATGAGAATGAAGGCCGTTGGCAGTCTAGTGAGCCTCCATCTC TCTATATATTCATTAATTGCAGTACACGAGAACTTGGTTATATAGAGAAGTATGTGGAAAAATTTGCTCCGTCAACACCA GCACTTCTATTCAATCTTGAACTAGATACATTGCGTGCGGATTTAGGCCTTCTAGGCTTCCCACCCAAAGATTTGCATTA CCGCTTTCTTTCTCAATTCACTCCTGTGTTCTACATTCGGATAAGAGATTATTCAAAGACAGTTGCAATAGCGCCTTATA TTGTCAACTACAGTGGAGCTGTGTTTCGTCAGTACCCTGGTCCTTGGCAGGTGATGCTTAAACAAGCAGATGGCTCTTTT GCTTGCATAGCAGAGAGTGCAACCCGCTTCACCCTTGGCCAAAGAAGAATTGTTAAGAGTCCTGGGACTTCAAGAAGAAG AGGGAAGCTCTCTACAATTTCTTCGAAGAGGCTACAAGGCAAGCACGTGGTGGGAAGAGGATTCTGA
Protein sequence (LotjaGi3g1v0348900.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSMAISSLPHNSTFLHPLAQFHSPSPSSSQTLRNLPFRLTTRIQSVGVGREAASSQPGSGPDPKAGVSLYKPKSYEVL VTDAAKSLALALQDGTLRLEIDFPPLPSSISSYKGSSDDFIDANIQLALAVVRKLQEKKETRACIVFPDKPEKRRASELF KAAMDSIDGITIGSLDDVPGGPMTSFFRSVRSTLDFDFEDENEGRWQSSEPPSLYIFINCSTRELGYIEKYVEKFAPSTP ALLFNLELDTLRADLGLLGFPPKDLHYRFLSQFTPVFYIRIRDYSKTVAIAPYIVNYSGAVFRQYPGPWQVMLKQADGSF ACIAESATRFTLGQRRIVKSPGTSRRRGKLSTISSKRLQGKHVVGRGF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 23 | 335 | 313 | 7.3E-155 | – | |
| PANTHER | 23 | 335 | 313 | 7.3E-155 | – | |
| Pfam | 74 | 334 | 261 | 1.0E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi3g1v0348900.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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