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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0341400 |
| Transcript ID | LotjaGi2g1v0341400.7 |
| Related isoforms 6 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Protein LOW PSII ACCUMULATION 3, chloroplastic; TAIR: AT5G48790.1 LOW PSII ACCUMULATION protein (DUF1995); Swiss-Prot: sp|Q8H0W0|LPA3_ARATH Protein LOW PSII ACCUMULATION 3, chloroplastic; TrEMBL-Plants: tr|G7K855|G7K855_MEDTR Plant/K24G6-12 protein; Found in the gene: LotjaGi2g1v0341400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:81842327..81845955) extracted from Lotus japonicus Gifu genome v1.2.
TTAAAATGAGATTTCTGCCTGTAAATCATTTCTTTCTTTTACTTTGATTTGAGGCTTTTCTTGGTGCATGAGACAGAGAT TGAGAGGTGTAGCTTCAATTTGGAAATGGTGTTATCCACTCTCCCTGTTTCTCCAACTGCAATTCCTTCCCTACCATCTT CAACAGTAATTCAAATCTCTGCTTCAAAGTTGGAAAAAAATGCTTCCTTCACATTGTCTGATTCTTATACCTCCCTCACT GTGATTGTTTCTTCACTCTTTAGGTTGTCAAGTCTGAAGCTTTTTCGCTAAAAAATGGTGGGTTTATAAGGATTAGAGGT GATACTGCTTCTTCAATGGTGCCCACCAATCGCAAATTAGCAACTTGTTCTGTTTCAGCTTCGGATGACGGCAATGCCTC TGTTGAGACTGATGTACCTTTCCCTTTTGATTACTCTGAGCTTCTGGAACAAGTAATTGTTTCTTGATTATCCCTTTGCA TCAATTTTTATGTTCATTGTAACATTCAGTAGCTTTGGTATTATTGATGGGACAATAAGTTTGATTGAAAATTCTTCTGC AATTGATTCTAAAGTTAAAATTAATTATGGGTAGAAGCTTCTATAAGTAGTTTCTTACTGCCAGAATTGATTCTGAGAAA AAGAAAAGTAAGCTGATCCAAACATGGTAGTTGTGGTTTGATCATGTTTATGTCAATGTAAGTATTTTGCAGTGCAACAG TGTGAGTAAAATTTTACTGAACCATTTTTCTAAAGGTAGAACTATATCTATTGCTCTATGTCATGTACACTCAGAAACAA CAGTTGTTAATAGAACAAATATTTAAATTCATGTTTTTATTAATGAATATCAACCAACAGGCTAAGGTTGCAGTAGAATT GGCTATGAAGGACAACAAACAGCTCATGGTGAGTCATATTTGGTAAATATTTAAATGATTGAAAGTTACACACTTCAAAC TGATGAGATATCTATTATGGATGTCTATCTTATACAGGAGATTGAGTTTCCCACAGCTGGACTTCAGTCCGTGCCAGGTT CCACATTTTTTATTTGACTCATTTTAACATTGTTTCAATCTATATGCTAATTGACTCATCTCACTCATATCATAGGTGAT GGTGAAGGTGGAATCGAGATGACAGGGAGCATGCAATTGATTCGTGAATTTTGTGACAGCTTCGTTACTTCAGAGAAAAT CACACGAACAAGAATAGTAATCATCTTGATTTAGAGCATCATTCTACTTTATGCATCCGGCATGCGTTTCTGGATGAAAA CGCCTTTGTACAAGTAAAAGTTTGTTTGTGCTCCTTGTGTTTCTTTAACTTATATTGAAAGTTGATTTTGGATGAACTTT TATTTTTTCTTAACATACAAGCTAAAGTCTACTGTCAGTTTCAGAGTCTCTTGCTCTGTCACTCCTACGCAAAGCATGTT GAATATGAGCAGGGGCAAAACCAGAAAAATGTTTTAGGGGAGATGGTTAGAATAAATAATGACTAACTATAGCTTATAAT TATCTAAAGTAAAGTTTAATGAAAATATATCATATATGTCCACATTGATGTAAAGAAAACACATGTAGATTATTAAGGAT ATTTCCATTTAATCACACCGGTATAGGTTTTATTTGCATTTTATTTTAATTTTATCTATACTACGAGAGAATAAAAATCC GTGATTTGTTTATACATTTGAAACAATTCATAGAATATATATATATATATATATATATATATATATATATATATATATAT AGGGATTATATGATTTACAAAGCCCTATTATTCCATCATATGAATATGTAACATCTGTTTAGGGCGGGTTGCTACCCCTT TTAAACTATTCCTAGTTCCTCCCCTGAATATGAGCCAAGATTTTATGCTAGGGGATTATGTATAGTTTGATTGATCCTAA TAGCTCTGACTTTCTCATTATGTATGTTTCCTTCACATCTTGTTCTTTAGAAATGTTTATTTTCATAATTTAGCTCACCA CTTCCAGTTGAAATTGATGGACAACCTTGTTAAAATCAGTTTTTTCCAGAGGCTAGCGAAGTTGACTTTGCCAGACAATC AGTCTTTAGTGGAGCTTCTTTTAAGTTGGACTATCTGACAAAGCCTTCATTTTTCGAAGATTTTGGTTTTGTGGAAAAAG TAAGGATGTCGGACAGAGTGAAGGAAGGAGATGAACTTTTCTTGGTGGCTTACCCATATTTTAATGTCAATGGTAGATCC AAAGTTCCTTATTTTCTTCAATATAAGGGAAGTTTCATCATCATAACTACTGTTTCATTGCATTTCAGAAATGCTTGTTG TGGAAGAACTATACAAAGAGGCAGTCTTGAACACTGAACGGAAACTGATTGTTTTCAATGGAGAACTCGATCGTATAAGG TCTGGGTGTATCCTTTCCCAAATTGTGTGGCTGTTTAATTTTTAGTTGGACCTATTGCTCATATCCTGCATTTGTTTTTG TCTTTTTGAGGTAAGTATCAATTTGGTAGTACTGAGAAAATGAGGTGCCAGAGACAATCATGTCAAACATATGATTTTGA GATAAGTTTTACAACATTAGAAAGTCTCAATTTCCTTCTGGGCTTACACAAAATAGTTCTCCTTGAATAGTTGAATGGAT CAAGATTATCCATCATTCTTCTACCCAAAGCTTGCTGCACTCACCAAGTCCTTCCTGCCTGCAATGGAAACTGTGTATTA TATTCACAATTTCAAGGGCCGCAATGGAGGAACACTTTTCAGGTCTGTTATCTAGTTATCTCCAATCAGTCTAATATATA GGAAATTTTGGTAATCTGGGACTATTCAATATCATGATGCTTGGATATGATATAGAATATAGCAAGGTTTTGTTTGGTTC GTTAACTTATGAACTCTATTTTGTTTATTTATTGTTGAGTGCATAATACAACTTACATGTTGCGTGTTTATTACACGTTC CGTAGGTGCTATCCAGGTCCCTGGAAGGTCCTCAGAAGGGTGGGGAGCACAAAATATGTTTGTCTACATCAACAGGATTC TATGCCATCCCTCAAGGAAGTTGCCCTTGAGATTCTTCCAGCAACTTGATGTTCAGTAAATAGTAATGGTAAGCAATTCT TATGTACTGATGTGTATAAACAAGTACTCAACCTACTTTCTTGTTTCGAAGGGACGAATGAAAAGCAAAATCATGAAAAT ATGATTTGAAGTCTTTATCATGTACTGATGGGCAAGCAGGTTGTTGGCCAGCTTCTTCTGCAGAGTTTTAGAAAGAAGTC TACAATTGGCTTTTGATGAACAAAGTATTGAAGTTGTGACAAAAAAAACTGCGTTTTCTAGCATCTTTAGCAAGTTGCTA TAATCTGAGCAATACATGTTTTTTTTTTACATGTGTAATTCGGTTGCTGGAATCACCTTGTTTCTTTTGTGTTGGAATTG GAGAACCAGCGAAGATAATTTCCTGTATTTTGAGACACAGTTTCCTTGCATGACTGATTGCAGCAGATGATACACTCAAA TCTGTATGTCATGCACACCATGCTCACTAATTGTTACAAGCTTAACTAAAGATAAAGGAATTGTTCCAATTGTGACAACC GCAGTAATAAAATCCTTACTATCTTGGGG
CDS sequence (LotjaGi2g1v0341400.7) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGTTATCCACTCTCCCTGTTTCTCCAACTGCAATTCCTTCCCTACCATCTTCAACAGTTGTCAAGTCTGAAGCTTT TTCGCTAAAAAATGGTGGGTTTATAAGGATTAGAGGTGATACTGCTTCTTCAATGGTGCCCACCAATCGCAAATTAGCAA CTTGTTCTGTTTCAGCTTCGGATGACGGCAATGCCTCTGTTGAGACTGATGTACCTTTCCCTTTTGATTACTCTGAGCTT CTGGAACAAGCTAAGGTTGCAGTAGAATTGGCTATGAAGGACAACAAACAGCTCATGGAGATTGAGTTTCCCACAGCTGG ACTTCAGTCCGTGCCAGGTGATGGTGAAGGTGGAATCGAGATGACAGGGAGCATGCAATTGATTCGTGAATTTTGTGACA GCTTCGTTACTTCAGAGAAAATCACACGAACAAGAATATTTTTTCCAGAGGCTAGCGAAGTTGACTTTGCCAGACAATCA GTCTTTAGTGGAGCTTCTTTTAAGTTGGACTATCTGACAAAGCCTTCATTTTTCGAAGATTTTGGTTTTGTGGAAAAAGT AAGGATGTCGGACAGAGTGAAGGAAGGAGATGAACTTTTCTTGGTGGCTTACCCATATTTTAATGTCAATGAAATGCTTG TTGTGGAAGAACTATACAAAGAGGCAGTCTTGAACACTGAACGGAAACTGATTGTTTTCAATGGAGAACTCGATCGTATA AGGTCTGGGTATTATCCATCATTCTTCTACCCAAAGCTTGCTGCACTCACCAAGTCCTTCCTGCCTGCAATGGAAACTGT GTATTATATTCACAATTTCAAGGGCCGCAATGGAGGAACACTTTTCAGGTGCTATCCAGGTCCCTGGAAGGTCCTCAGAA GGGTGGGGAGCACAAAATATGTTTGTCTACATCAACAGGATTCTATGCCATCCCTCAAGGAAGTTGCCCTTGAGATTCTT CCAGCAACTTGA
Protein sequence (LotjaGi2g1v0341400.7) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVLSTLPVSPTAIPSLPSSTVVKSEAFSLKNGGFIRIRGDTASSMVPTNRKLATCSVSASDDGNASVETDVPFPFDYSEL LEQAKVAVELAMKDNKQLMEIEFPTAGLQSVPGDGEGGIEMTGSMQLIREFCDSFVTSEKITRTRIFFPEASEVDFARQS VFSGASFKLDYLTKPSFFEDFGFVEKVRMSDRVKEGDELFLVAYPYFNVNEMLVVEELYKEAVLNTERKLIVFNGELDRI RSGYYPSFFYPKLAALTKSFLPAMETVYYIHNFKGRNGGTLFRCYPGPWKVLRRVGSTKYVCLHQQDSMPSLKEVALEIL PAT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 26 | 26 | - | – | |
| PANTHER | 3 | 322 | 320 | 1.3E-161 | – | |
| PANTHER | 3 | 322 | 320 | 1.3E-161 | – | |
| Pfam | 74 | 316 | 243 | 3.0E-45 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0341400.7, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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