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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR020983
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
or

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Download the entire search result as a CSV file.

We have found 6 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.502s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0317419.1
n.a. PREDICTED: light-inducible protein CPRF2-like isoform X2 [Cicer arietinum] gi|502117378|ref|XP_004495800.1| chr0 165818873 165819821 +
2 domain predictions
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Lj1g3v4979980.1
n.a. Opaque [Medicago truncatula] gi|357512331|ref|XP_003626454.1| chr1 60603966 60607415 +
2 domain predictions
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Lj5g3v1412990.1
n.a. PREDICTED: light-inducible protein CPRF2-like isoform X2 [Cicer arietinum] gi|502117378|ref|XP_004495800.1| chr5 20982244 20987037 -
2 domain predictions
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Lj5g3v1412990.2
n.a. PREDICTED: light-inducible protein CPRF2-like isoform X1 [Cicer arietinum] gi|502117375|ref|XP_004495799.1| chr5 20982244 20987037 -
2 domain predictions
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LotjaGi1g1v0781500.1
n.a. BZIP transcription factor family protein; TAIR: AT5G28770.2 bZIP transcription factor family protein; Swiss-Prot: sp|Q99090|CPRF2_PETCR Light-inducible protein CPRF2; TrEMBL-Plants: tr|I1JRM9|I1JRM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0781500 LjG1.1_chr1 135455480 135459953 +
2 domain predictions
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LotjaGi5g1v0212900.1
n.a. BZIP transcription factor; TAIR: AT5G28770.2 bZIP transcription factor family protein; Swiss-Prot: sp|Q99090|CPRF2_PETCR Light-inducible protein CPRF2; TrEMBL-Plants: tr|A0A072VN13|A0A072VN13_MEDTR Transcription factor bZIP88; Found in the gene: LotjaGi5g1v0212900 LjG1.1_chr5 51807759 51813061 -
2 domain predictions
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