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Lj1g3v4979980.1

Overview

Field Value
Gene ID Lj1g3v4979980
Transcript ID Lj1g3v4979980.1
Lotus japonicus genome version MG20 v3.0
Description Opaque [Medicago truncatula] gi|357512331|ref|XP_003626454.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
45 67 23 – –
PANTHER
PTHR22952:SF197
53 313 261 6.90E-101 –
PANTHER
PTHR22952
53 313 261 6.90E-101 –
MobiDBLite
mobidb-lite
173 202 30 – –
SMART
SM00338
201 265 65 7.20E-20
IPR004827
Gene3D
G3DSA:1.20.5.170
202 256 55 5.00E-13 –
ProSiteProfiles
PS50217
203 255 53 11.634
IPR004827
Pfam
PF00170
204 255 52 3.00E-14
IPR004827
SUPERFAMILY
SSF57959
205 255 51 4.22E-12 –
ProSitePatterns
PS00036
208 223 16 –
IPR004827
Coils
Coil
214 248 35 – –
Coils
Coil
263 283 21 – –
Pfam
PF12498
272 315 44 8.90E-15
IPR020983

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003700
Molecular function DNA-binding transcription factor activity A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
Subterm of
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj1g3v4979980.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v4979980.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.