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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR021183
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.385s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0139440.1
n.a. NMDA receptor-regulated protein [Medicago truncatula] gi|357455033|ref|XP_003597797.1| chr3 1029218 1034156 -
2 domain predictions
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Lj3g3v0139440.2
n.a. PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit [Glycine max] gi|356550567|ref|XP_003543657.1| chr3 1029218 1046527 -
3 domain predictions
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Lj3g3v2247180.1
n.a. PREDICTED: N-alpha-acetyltransferase 16, NatA auxiliary subunit-like [Glycine max] gi|356526163|ref|XP_003531689.1| chr3 27799235 27813366 -
3 domain predictions
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Lj3g3v2809080.1
n.a. PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit [Vitis vinifera] gi|225442715|ref|XP_002284882.1| chr3 34393950 34398715 +
2 domain predictions
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Lj3g3v2809080.2
n.a. PREDICTED: N-alpha-acetyltransferase 15, NatA auxiliary subunit [Vitis vinifera] gi|225442715|ref|XP_002284882.1| chr3 34394395 34398715 +
2 domain predictions
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LotjaGi1g1v0018300_LC.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|I3SZZ2|I3SZZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0018300_LC LjG1.1_chr1 2250997 2255924 -
2 domain predictions
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LotjaGi1g1v0150800_LC.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|I3SZZ2|I3SZZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0150800_LC LjG1.1_chr1 25918272 25922947 +
2 domain predictions
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LotjaGi3g1v0014700.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9BXJ9|NAA15_HUMAN N-alpha-acetyltransferase 15, NatA auxiliary subunit; TrEMBL-Plants: tr|A0A072VDQ9|A0A072VDQ9_MEDTR Amino-terminal acetyltransferase, putative; Found in the gene: LotjaGi3g1v0014700 LjG1.1_chr3 1548402 1566203 -
3 domain predictions
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LotjaGi3g1v0014700.2
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|A0A1J7HQ13|A0A1J7HQ13_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0014700 LjG1.1_chr3 1549181 1564867 -
3 domain predictions
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LotjaGi3g1v0361700.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9BXJ9|NAA15_HUMAN N-alpha-acetyltransferase 15, NatA auxiliary subunit; TrEMBL-Plants: tr|I1KV97|I1KV97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0361700 LjG1.1_chr3 74509918 74524622 -
3 domain predictions
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LotjaGi3g1v0361700.2
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|I1KV97|I1KV97_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0361700 LjG1.1_chr3 74511592 74523737 -
3 domain predictions
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LotjaGi3g1v0443800_LC.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|I3SZZ2|I3SZZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0443800_LC LjG1.1_chr3 85701315 85706396 +
2 domain predictions
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LotjaGi3g1v0455900_LC.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|I3SZZ2|I3SZZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0455900_LC LjG1.1_chr3 86955531 86960150 -
2 domain predictions
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LotjaGi6g1v0224400_LC.1
n.a. N-alpha-acetyltransferase 16, NatA auxiliary subunit; TAIR: AT1G80410.1 tetratricopeptide repeat (TPR)-containing protein; Swiss-Prot: sp|Q9DBB4|NAA16_MOUSE N-alpha-acetyltransferase 16, NatA auxiliary subunit; TrEMBL-Plants: tr|A0A0J8BIF7|A0A0J8BIF7_BETVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0224400_LC LjG1.1_chr6 52939406 52943515 -
2 domain predictions
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