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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022309
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 17 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 0.020s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2682540.1
n.a. Ribosome biogenesis NSA2-like protein [Aegilops tauschii] gi|475482586|gb|EMT02990.1| chr1 31219610 31221640 -
2 domain predictions
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Lj1g3v2682540.2
n.a. PREDICTED: ribosome biogenesis protein NSA2 homolog [Cucumis sativus] gi|449523511|ref|XP_004168767.1| chr1 31219610 31221013 -
2 domain predictions
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Lj1g3v3580650.1
n.a. 40S ribosomal protein S8 [Zea mays] gi|162464180|ref|NP_001105391.1| chr1 41142071 41144872 +
2 domain predictions
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Lj2g3v1828480.1
n.a. PREDICTED: ribosome biogenesis protein NSA2 homolog [Cucumis sativus] gi|449523511|ref|XP_004168767.1| chr2 27469890 27471922 -
2 domain predictions
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Lj3g3v0718230.2
n.a. 40S ribosomal protein S8 [Zea mays] gi|162464180|ref|NP_001105391.1| chr3 7770061 7774059 -
2 domain predictions
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LotjaGi1g1v0395500.1
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|A0A151RLR2|A0A151RLR2_CAJCA 40S ribosomal protein S8; Found in the gene: LotjaGi1g1v0395500 LjG1.1_chr1 88150135 88151130 -
2 domain predictions
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LotjaGi1g1v0478200.1
n.a. Ribosomal protein S8e/ribosomal biogenesis NSA2; TAIR: AT5G06360.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog; TrEMBL-Plants: tr|I3SG84|I3SG84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0478200 LjG1.1_chr1 99000038 99003450 -
2 domain predictions
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LotjaGi1g1v0592400.1
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3SIQ8|I3SIQ8_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi1g1v0592400 LjG1.1_chr1 113238759 113241900 +
2 domain predictions
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LotjaGi1g1v0592400.2
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|A0A0E0KPA7|A0A0E0KPA7_ORYPU 40S ribosomal protein S8; Found in the gene: LotjaGi1g1v0592400 LjG1.1_chr1 113238915 113241462 +
2 domain predictions
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LotjaGi2g1v0395700.1
n.a. Ribosomal protein S8e/ribosomal biogenesis NSA2; TAIR: AT5G06360.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog; TrEMBL-Plants: tr|I3SG84|I3SG84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0395700 LjG1.1_chr2 89314516 89316501 -
2 domain predictions
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LotjaGi2g1v0395700.2
n.a. Ribosomal protein S8e/ribosomal biogenesis NSA2; TAIR: AT5G06360.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog; TrEMBL-Plants: tr|I3SG84|I3SG84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0395700 LjG1.1_chr2 89314516 89316606 -
2 domain predictions
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LotjaGi3g1v0089400.1
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3SIQ8|I3SIQ8_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi3g1v0089400 LjG1.1_chr3 10103154 10106473 +
2 domain predictions
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LotjaGi3g1v0089400.2
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3SIQ8|I3SIQ8_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi3g1v0089400 LjG1.1_chr3 10103310 10105621 +
2 domain predictions
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LotjaGi6g1v0150500.1
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3S9U3|I3S9U3_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi6g1v0150500 LjG1.1_chr6 42641799 42645286 +
2 domain predictions
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LotjaGi6g1v0150500.2
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3S9U3|I3S9U3_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi6g1v0150500 LjG1.1_chr6 42642072 42644041 +
2 domain predictions
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LotjaGi6g1v0150500.3
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3S9U3|I3S9U3_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi6g1v0150500 LjG1.1_chr6 42642072 42644592 +
2 domain predictions
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LotjaGi6g1v0150500.4
n.a. 40S ribosomal protein S8; TAIR: AT5G59240.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q08069|RS8_MAIZE 40S ribosomal protein S8; TrEMBL-Plants: tr|I3S9U3|I3S9U3_LOTJA 40S ribosomal protein S8; Found in the gene: LotjaGi6g1v0150500 LjG1.1_chr6 42642072 42644806 +
2 domain predictions
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