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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0478200 |
| Transcript ID | LotjaGi1g1v0478200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal protein S8e/ribosomal biogenesis NSA2; TAIR: AT5G06360.1 Ribosomal protein S8e family protein; Swiss-Prot: sp|Q54GN8|NSA2_DICDI Ribosome biogenesis protein NSA2 homolog; TrEMBL-Plants: tr|I3SG84|I3SG84_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0478200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:99000038..99003450) extracted from Lotus japonicus Gifu genome v1.2.
GACAAAACTTTAACCGGTGATAGTTAATTAAATATTTAATTTTTCTGAGTCGAAACGTGGTCGTTTGTTTGCAATTTGAA ACAACTAAACCCTGAAAACGTATCATACATCTGAAACACATTCTCCTCTCTCGCCGCCTCCCCCATCGCTGTCATGGTTC GTCCTTCAACTTCACTTTCCACCGATTCTCAATTTCTTTGCGTTTGTTTTCTGACTACTGTGGTTGTTTATGTATGTAAT TGCAGCCGCAAGGAGATTACATAGAACGTCATATAAGAGATTATGGCTACCGTCCTGATCACTTCGAGCGCAAGCGCAAG AAGGATGCTCGTGAAGTTCACAAGCGCTCCCAAATTGCCCAGAAGGCTATTGGTATTAAGGGCAAGATGATTGCCAAGAA AAATTATGCTGAAAAAGCTCAGATGAAAAGAACGTGAGTTTAGTTTAACTTCTATGTAATGTTCCGCGTATTGTCTATGT GTTTATGCCAAAATAATTTCTGCTTGATTTCTTACATATGGATTATTTTTCAATGGGATGTATATGTATATTATGGAGTT GTTATATGATGTTGAATACTTAGCATTGTTAGTTTTTCGTCGGGTTCGTAGGCTGTTTCGTGTATGAGAAAATGATTTAA CTTTGGCGTTTCAACTTTCAACAGTATTGCCATGCATGAGGAATCAACGTCCAGGCGAAAGGCTGATGATAATGTTCAAG AGGGAGCTATTCCTGCATATCTTATGGATCGTGAGAACACCGCCAGGGCAAAGATTATTAGCAACACCATTAAGCAAAAG AGGAAGGAGAAGGCTGGGAGATGGGATGTTCCCCTACCTAAGGTCAGATTGCATTCTCTACTTTTCATTAGATAATAATG TTAAATGAATCATATCTCTTGAGTATTAGCGTCAACCGTCAATGTGTGATTTCTCATTTCTGCAGGTGCGTCCTGTGGCT GAAGATGAAATGTTCAAAGTCGTCCGCACTGGAAAAAGAAAGAGTAAGTTCTTACCTTTATTAAAGGGTATTAGAGAGAA TGCATAATGATCATTTCAGCAGCATATCTGATAGAATTTGGCTCACCATTTTGCAGCCAAGCAATGGAAGAGAATGGTTA CCAAAGCTACATTTGTTGGGCCTGGTTTTACTAGGAAACCTCCCAAGTATGAGCGGTTCATTCGTCCTACTGGACTGCGA TTCACCAAAGCTCATGTCACTCATCCAGAACTTAAATGCACATTCAATCTAGAAATAATTGGAGTGAAGAAAAACCCTAA TGGCCCTATGTACACCTCTCTTGGTGTCATGACCAAGGGGACTATAATTGAGGTGTTTATCTTTCCTGCTCTTTTAATTG AGGGTTATTTTCGTTGACACAATCTAAAGCATTTAAGTTGATCCTGACACTTCCTGTAATTTTAGGTGAATTGCAGTGAA CTTGGTCTGGTCACTCCTGCAGGAAAAGTTGTGTGGGGTATGATTTTGTTACTTGTATTTGGCTTTGTCATGATTGATTG AATTTTTAATGGGAACTGATGCACTGGATTTAATTTGCCATGGATGCAGGTAAATATGCTCAGGTTACCAATAACCCAGA AAATGATGGTTGTATAAATGCTGTATTGCTTGTTTAAGGTCAGAGCAAGTATTGGAGTTCTAACATGACTTCAGAAAACA GTGGTTAAGTTCATCTCCCATGATTTTTGCAGTCTTGTAGGTATAAACTATACCCCCATCCCCAATGTTACGGAACACTA TGCAGTATTTGCTGGTACTTGAGGCTTCATCTTGGAATTTAGTGAGGGATTTTTGTTATTGGATTGTGATATGTCATGTT CTGCTATTCCTTTTATTTCTGTTTTTCTTTTTATTTGGATAGTCAATGCAATGATCAAATCTAGCACTTTATCATTTAGA GTTAACTATATTGCCAAATTTTAATGAAGTTTAACTATCATTTAGTGCATATAATAACGGATGTGCTGAGGTAGAATTAA ACATTTTTTTACAAGCAATTTGGACATTGCTTGAGTTAGTTTTCTAGTCCTAACAAACTTTGGGACTCTAACTAAATGTG TTTTTGTCATTTGATGTTTTAAAATTCACAACCAGGGCACGGTTCCAGTTGGTAAATTTGCTTGGCGGAGATAATGGTGT GGCTATATTTTTAGAATATGCTGTTTTTTGGTTTTGATAACGTTCAAAAGGTTGTCGCAAGTGGAGCATAACTAACTATT TACCAGTTATTATTGTGACTAATGGTTGTGAAAATATATATAGTTCAAGTCCGGAAGCCCCTGCAGTATCTTCTAATGAT GGGGGCAGAGTGAGATGACTAGGCTCTCTATAAGGTTTGCTGTATAATGAAATTACTGCAATCTTGAATGGGAGAAGAGA ATGCGGGATGGAAGGGATGAGAATATTTTGATGTGGGGTGGGGGGGAATTTAGTTTTACCCCTAAGATTATGTTCTTTAT ATTTTGTCTGAAGATGATGTTCTATTGTTCTTTTTATTTGGTCAGCATGAGGCTCCTTAATGGGCTTGATTTTATCTTGT ACGCACCTTAAAATCAACCAAAAAGAAGAAACTTCTTAAATCAACCAAAAAGAAGAATCTTAGGAAGAACAATCATAGGA AGAAAAATCAATACCCAAAATCAATACCCATTAGATGAATTGATACCCATTTTTTTCCAACTTCTTTGGTCTGCATCTTT GGTTGGGGTATAGGAAACGGTCCAATCATAGGAAGAAAAATCAATACCCATTAGATGAATTGATACCCATTTTTTTTCCA ATTTCTTTGGTCTGCATCTTTGGTTGTGGTATAGGAAACGGTCCAATCAATCAATACCCATTCTTTAAAAATCAAAACTT TTCAATCAATACCCATGTTTCCAATTTCTTCTTCCATGTGTGTTACCTCTCCCAGATCTGCGGTGGTGGCGATGTTGGTT CTAGTTGAGGGAAGGAGATGGTGGTGCGATCATGAAGGAAACGAGGTGGTGGCAGCGTGGCTATGGAAGGGAGAGGAGAG GAGAGGTGGTGATCAATTTCTAGTTATTTGATGTGTTGATGAAGATTGGGGAAAAAATATTTTGGTTTGTTCTTCATTAT GTTGGTTTTATGTGAAGGTGGGTGAGGAAGGAGGTGGGTGAGAATATGTTGTGTCAATCTCACTTCTAGGTTTGAAGATG ATGAAGATGATAAAGGAAGAAGATGAAGAATAAGTGTTTTCTGGATTTTAATTTTTAAATTTTGGTTCATTTGCACTATT GGTCCCCAAAACCGTTAGTTTTTAGATGAAAAAGAGAGGAGAGACCAAAATTGTTAACGGAGGTTAACGTTGGGGGTGCA TAATGGAATTTTTGAAGTTTAGGGACCGCGATGGCACATATAGCATTCGTGGG
CDS sequence (LotjaGi1g1v0478200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCGCAAGGAGATTACATAGAACGTCATATAAGAGATTATGGCTACCGTCCTGATCACTTCGAGCGCAAGCGCAAGAA GGATGCTCGTGAAGTTCACAAGCGCTCCCAAATTGCCCAGAAGGCTATTGGTATTAAGGGCAAGATGATTGCCAAGAAAA ATTATGCTGAAAAAGCTCAGATGAAAAGAACTATTGCCATGCATGAGGAATCAACGTCCAGGCGAAAGGCTGATGATAAT GTTCAAGAGGGAGCTATTCCTGCATATCTTATGGATCGTGAGAACACCGCCAGGGCAAAGATTATTAGCAACACCATTAA GCAAAAGAGGAAGGAGAAGGCTGGGAGATGGGATGTTCCCCTACCTAAGGTGCGTCCTGTGGCTGAAGATGAAATGTTCA AAGTCGTCCGCACTGGAAAAAGAAAGACCAAGCAATGGAAGAGAATGGTTACCAAAGCTACATTTGTTGGGCCTGGTTTT ACTAGGAAACCTCCCAAGTATGAGCGGTTCATTCGTCCTACTGGACTGCGATTCACCAAAGCTCATGTCACTCATCCAGA ACTTAAATGCACATTCAATCTAGAAATAATTGGAGTGAAGAAAAACCCTAATGGCCCTATGTACACCTCTCTTGGTGTCA TGACCAAGGGGACTATAATTGAGGTGAATTGCAGTGAACTTGGTCTGGTCACTCCTGCAGGAAAAGTTGTGTGGGGTAAA TATGCTCAGGTTACCAATAACCCAGAAAATGATGGTTGTATAAATGCTGTATTGCTTGTTTAA
Protein sequence (LotjaGi1g1v0478200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPQGDYIERHIRDYGYRPDHFERKRKKDAREVHKRSQIAQKAIGIKGKMIAKKNYAEKAQMKRTIAMHEESTSRRKADDN VQEGAIPAYLMDRENTARAKIISNTIKQKRKEKAGRWDVPLPKVRPVAEDEMFKVVRTGKRKTKQWKRMVTKATFVGPGF TRKPPKYERFIRPTGLRFTKAHVTHPELKCTFNLEIIGVKKNPNGPMYTSLGVMTKGTIIEVNCSELGLVTPAGKVVWGK YAQVTNNPENDGCINAVLLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 260 | 260 | 3.2E-149 | ||
| CDD | 4 | 260 | 257 | 0.0 | ||
| Pfam | 32 | 259 | 228 | 8.6E-47 | ||
| Gene3D | 179 | 260 | 82 | 5.8E-10 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0478200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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