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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR025852
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 13 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.194s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj3g3v0338980.1
n.a. Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| chr3 2716918 2725300 -
2 domain predictions
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Lj3g3v0338980.2
n.a. Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| chr3 2716918 2725300 -
2 domain predictions
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Lj3g3v0338980.4
n.a. Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| chr3 2717679 2725300 -
2 domain predictions
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Lj3g3v2655630.1
n.a. Ataxin-2 [Medicago truncatula] gi|357454537|ref|XP_003597549.1| chr3 32308156 32314220 -
2 domain predictions
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Lj6g3v0920410.1
n.a. AT4g26990/F10M23_330 [Arabidopsis lyrata subsp]. lyrata] gi|297799292|ref|XP_002867530.1| chr6 9257491 9264608 +
2 domain predictions
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LotjaGi3g1v0029400.1
n.a. CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 LjG1.1_chr3 3217889 3227185 -
2 domain predictions
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LotjaGi3g1v0029400.2
n.a. CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 LjG1.1_chr3 3217889 3227185 -
2 domain predictions
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LotjaGi3g1v0029400.3
n.a. CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 LjG1.1_chr3 3217889 3227185 -
2 domain predictions
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LotjaGi3g1v0029400.4
n.a. CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 LjG1.1_chr3 3218157 3227120 -
2 domain predictions
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LotjaGi3g1v0029400.5
n.a. CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 LjG1.1_chr3 3218157 3227120 -
2 domain predictions
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LotjaGi3g1v0029400.6
n.a. CTC-interacting domain 4; TAIR: AT1G54170.1 CTC-interacting domain 3; Swiss-Prot: sp|Q8L793|CID3_ARATH Polyadenylate-binding protein-interacting protein 3; TrEMBL-Plants: tr|I1M589|I1M589_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0029400 LjG1.1_chr3 3218345 3227062 -
2 domain predictions
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LotjaGi3g1v0417300.1
n.a. CTC-interacting domain 4; TAIR: AT3G14010.1 CTC-interacting domain 4; Swiss-Prot: sp|Q94AM9|CID4_ARATH Polyadenylate-binding protein-interacting protein 4; TrEMBL-Plants: tr|A0A072TMN5|A0A072TMN5_MEDTR CTC-interacting domain protein; Found in the gene: LotjaGi3g1v0417300 LjG1.1_chr3 82382072 82394690 +
2 domain predictions
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LotjaGi6g1v0167200.1
n.a. Polyadenylate-binding protein-interacting protein 4; TAIR: AT5G54920.1 polyadenylate-binding protein interacting protein; Swiss-Prot: sp|Q94AM9|CID4_ARATH Polyadenylate-binding protein-interacting protein 4; TrEMBL-Plants: tr|K7MQZ4|K7MQZ4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0167200 LjG1.1_chr6 45140836 45148663 +
2 domain predictions
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