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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033250
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 10 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.679s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0081239.1
n.a. Uncharacterized protein TCM_000586 [Theobroma cacao] gi|508699471|gb|EOX91367.1| chr0 31699128 31700145 -
2 domain predictions
1 GO term
Lj0g3v0328919.1
n.a. Uncharacterized protein TCM_000585 [Theobroma cacao] gi|508699470|gb|EOX91366.1| chr0 171955676 171956378 -
2 domain predictions
1 GO term
Lj0g3v0353009.1
n.a. Uncharacterized protein TCM_016708 [Theobroma cacao] gi|508778126|gb|EOY25382.1| chr0 185694903 185695551 +
2 domain predictions
1 GO term
Lj2g3v1838170.1
n.a. Uncharacterized protein TCM_000585 [Theobroma cacao] gi|508699470|gb|EOX91366.1| chr2 27769489 27770133 -
2 domain predictions
1 GO term
Lj2g3v1849250.1
n.a. Uncharacterized protein TCM_000585 [Theobroma cacao] gi|508699470|gb|EOX91366.1| chr2 27796712 27797643 -
2 domain predictions
1 GO term
LotjaGi2g1v0399700.1
n.a. DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT3G50610.2 DNA-directed RNA polymerase II subunit RPB1-like protein; Swiss-Prot: sp|Q58694|BIOF_METJA Putative 8-amino-7-oxononanoate synthase; TrEMBL-Plants: tr|A0A0B2RT13|A0A0B2RT13_GLYSO Uncharacterized protein; Found in the gene: LotjaGi2g1v0399700 LjG1.1_chr2 89694445 89695071 -
2 domain predictions
1 GO term
LotjaGi2g1v0399800_LC.1
n.a. DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT2G23440.1 transmembrane protein; Swiss-Prot: sp|A7N075|DCUP_VIBCB Uroporphyrinogen decarboxylase; TrEMBL-Plants: tr|A0A0L9UR94|A0A0L9UR94_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0399800_LC LjG1.1_chr2 89700619 89701224 -
2 domain predictions
1 GO term
LotjaGi4g1v0106500.1
n.a. DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT5G66816.1 DNA-directed RNA polymerase II subunit RPB1-like protein; Swiss-Prot: sp|P22579|SIN3_YEAST Transcriptional regulatory protein SIN3; TrEMBL-Plants: tr|A0A151SXQ7|A0A151SXQ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0106500 LjG1.1_chr4 14858201 14859059 +
2 domain predictions
1 GO term
LotjaGi4g1v0106600.1
n.a. DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT3G50610.2 DNA-directed RNA polymerase II subunit RPB1-like protein; Swiss-Prot: sp|P9WKD8|KU_MYCTO Non-homologous end joining protein Ku; TrEMBL-Plants: tr|A0A151SXM3|A0A151SXM3_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0106600 LjG1.1_chr4 14918807 14919801 +
2 domain predictions
1 GO term
LotjaGi4g1v0241000.1
n.a. DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT3G50610.2 DNA-directed RNA polymerase II subunit RPB1-like protein; Swiss-Prot: sp|O89032|SPD2A_MOUSE SH3 and PX domain-containing protein 2A; TrEMBL-Plants: tr|A0A151QW93|A0A151QW93_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0241000 LjG1.1_chr4 57423768 57424743 +
2 domain predictions
1 GO term