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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0241000 |
| Transcript ID | LotjaGi4g1v0241000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT3G50610.2 DNA-directed RNA polymerase II subunit RPB1-like protein; Swiss-Prot: sp|O89032|SPD2A_MOUSE SH3 and PX domain-containing protein 2A; TrEMBL-Plants: tr|A0A151QW93|A0A151QW93_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0241000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:57423768..57424743) extracted from Lotus japonicus Gifu genome v1.2.
ATATCACATCACTTCACATTTTCCTCTTATAATCTGACATAACTAGCTACATTTGTTATAGGTCCTCTATTCTTCTATAC CAACCTTTTGCTTCTCCAAATCATGGGTAGATTTCATGTTATGCAAAATTACTTAGCTATTTTTCTAGCACTAGTTGCCT GCAACTATTTACCTCTAACTCATGGCCGCCAAATTAAGTCATTGAACCACCCTTCACCCCTAAGCACAGGCACAGTAGCG GTGAATATTAATGTTCCCACTCCATCATCAGAGAGGAGGAAAATTGAGTCACCCATGAAACCAAACTATGATGTAGCTAG TTTTGGAGATTCAGGTGCAGGCGACACACATGCTTTCCGACCTACAACACCAGGCAATAGTCCTGGTGTTGGTCACAAAA AGTTTGCACAAGATCAAGAAGATAACAGCATGAAAGCAATGGTTGGAGTTCAGAGCACAGATGGTTTCAAACCTACAAAC CCAGGTCACAGCCCTGGTGTGGGCCATGGTTACCAAACTAAAATTGGACACCTAAATTAGTCAGGCTGTCATGCATATAA GCAAATTAAATTCCCTTATAGGCTTCAAAACTAGTCCAACATATTATATCATGTGTACATGCAATAACATCACAATTAGT TGAATATGATTTGTAGAAATTTATAAAGTGCAAACATTCAACATACACTTAAAGTGAAAGGAGAGAAAAAAGAAGAGGAA ATGTATGTGATATTTAATCAAGGGATGGGAGATAGAAAAATTAAGTGTCTGTTGCGGGTTTACACTATTTAGATGTGTTA ATTAGTATCATTCTTGTTATATTAGTTTCATTCTGCACTCTACGACTCTGTATCTTGCATGCAATTAGCATGTGATAGAC TTAATCATTGTTATCCAACATATTTACAATTTGCTCTCTATACCAGTAATGTTGTATGATGTAAGTTTCAAAATAAATAG AAGATGTTATTTATTT
CDS sequence (LotjaGi4g1v0241000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTAGATTTCATGTTATGCAAAATTACTTAGCTATTTTTCTAGCACTAGTTGCCTGCAACTATTTACCTCTAACTCA TGGCCGCCAAATTAAGTCATTGAACCACCCTTCACCCCTAAGCACAGGCACAGTAGCGGTGAATATTAATGTTCCCACTC CATCATCAGAGAGGAGGAAAATTGAGTCACCCATGAAACCAAACTATGATGTAGCTAGTTTTGGAGATTCAGGTGCAGGC GACACACATGCTTTCCGACCTACAACACCAGGCAATAGTCCTGGTGTTGGTCACAAAAAGTTTGCACAAGATCAAGAAGA TAACAGCATGAAAGCAATGGTTGGAGTTCAGAGCACAGATGGTTTCAAACCTACAAACCCAGGTCACAGCCCTGGTGTGG GCCATGGTTACCAAACTAAAATTGGACACCTAAATTAG
Protein sequence (LotjaGi4g1v0241000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGRFHVMQNYLAIFLALVACNYLPLTHGRQIKSLNHPSPLSTGTVAVNINVPTPSSERRKIESPMKPNYDVASFGDSGAG DTHAFRPTTPGNSPGVGHKKFAQDQEDNSMKAMVGVQSTDGFKPTNPGHSPGVGHGYQTKIGHLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 9 | 9 | - | – | |
| ProSiteProfiles | 1 | 20 | 20 | 5.0 | – | |
| PANTHER | 1 | 138 | 138 | 7.1E-32 | ||
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 1 | 138 | 138 | 7.1E-32 | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 10 | 20 | 11 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Phobius | 29 | 145 | 117 | - | – | |
| MobiDBLite | 54 | 145 | 92 | - | – | |
| MobiDBLite | 110 | 125 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Root development | The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. |
Expression pattern of LotjaGi4g1v0241000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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