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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0106500 |
| Transcript ID | LotjaGi4g1v0106500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | DNA-directed RNA polymerase II subunit RPB1-like protein; TAIR: AT5G66816.1 DNA-directed RNA polymerase II subunit RPB1-like protein; Swiss-Prot: sp|P22579|SIN3_YEAST Transcriptional regulatory protein SIN3; TrEMBL-Plants: tr|A0A151SXQ7|A0A151SXQ7_CAJCA Uncharacterized protein; Found in the gene: LotjaGi4g1v0106500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:14858201..14859059) extracted from Lotus japonicus Gifu genome v1.2.
ATTTAGTCAAATGACATAATAGGCAATATGAATCTTAAGAAAAGCACCTTCACACTCATGATTATAAATACCAGAGGATC CTAGAACTCGCTATATCATCTCATCTAGCTACCTTTGCTAGCTTCTGACTCTTACTCTCAACTAACTATAGAATATTAAA TTTCCTATAGCTCATTCTTCCTTGTCAATCTCTTCCAACATAAAAACTAAAAAGCCTTAATTTCACCTCTTGCTTCTCTA GTCATGGGTGAATTTCAGGCCAGAACAATATATTTTCTTGTCTTCCTAGCACTATTTGCCTGTAATTGTTCCCTTCTATG TCATGGTAGGCCCCTAAAGCCAGTGAACTCACCTATTATGCCAAACCAAGATGTAGCTACTTCTGGAGATGCTGCAGGCG CATCTTACACAAATGCTTTCGAACCGACAACACCGGGAAACAGCCCTGGTGTTGGCCACCGAAGTTTTGCAGGGGAAGAT AACAAGATGGTGGCGGCTCAGAGCCCTGATGTTGGAGTTTCTGTGACTCAGGGATCCGAAAGTGATTTCAAACCTACAGA CCCAGGTCACAGCCCTGGTGTTGGCCATGCCTACCAAGAAAAAATTGGACATCTAAATTAGTCATCATGTATATAAGCAA ATTATCCTTAGTTTCATTGATTCTGTATTGCAGGTGAAAGTCATAATTATTTTAAGTCGTTTAATTAGATTTCTTGATTA TTGTATCACTCAAAATGTTAGTAGCATTTAATTTGCTGTATTTACTACTACTATTTAGAATTACTGGTTCTTTGTGACGC AAATTGCAAAATAAATAAAAGTTCTTAATTAATCTTATTCTATGTTTGTTGGGAATCAA
CDS sequence (LotjaGi4g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGAATTTCAGGCCAGAACAATATATTTTCTTGTCTTCCTAGCACTATTTGCCTGTAATTGTTCCCTTCTATGTCA TGGTAGGCCCCTAAAGCCAGTGAACTCACCTATTATGCCAAACCAAGATGTAGCTACTTCTGGAGATGCTGCAGGCGCAT CTTACACAAATGCTTTCGAACCGACAACACCGGGAAACAGCCCTGGTGTTGGCCACCGAAGTTTTGCAGGGGAAGATAAC AAGATGGTGGCGGCTCAGAGCCCTGATGTTGGAGTTTCTGTGACTCAGGGATCCGAAAGTGATTTCAAACCTACAGACCC AGGTCACAGCCCTGGTGTTGGCCATGCCTACCAAGAAAAAATTGGACATCTAAATTAG
Protein sequence (LotjaGi4g1v0106500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGEFQARTIYFLVFLALFACNCSLLCHGRPLKPVNSPIMPNQDVATSGDAAGASYTNAFEPTTPGNSPGVGHRSFAGEDN KMVAAQSPDVGVSVTQGSESDFKPTDPGHSPGVGHAYQEKIGHLN
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 20 | 20 | 5.0 | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| SignalP_EUK | 1 | 28 | 28 | - | – | |
| Phobius | 1 | 28 | 28 | - | – | |
| PANTHER | 5 | 119 | 115 | 8.4E-26 | – | |
| PANTHER | 5 | 119 | 115 | 8.4E-26 | ||
| Phobius | 9 | 20 | 12 | - | – | |
| TMHMM | 9 | 31 | 23 | - | – | |
| Phobius | 21 | 28 | 8 | - | – | |
| Phobius | 29 | 125 | 97 | - | – | |
| MobiDBLite | 42 | 69 | 28 | - | – | |
| MobiDBLite | 42 | 125 | 84 | - | – | |
| MobiDBLite | 89 | 103 | 15 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Root development | The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. |
Expression pattern of LotjaGi4g1v0106500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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