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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR033326
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 7 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.562s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v4896940.1
n.a. PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform 1 [Glycine max] gi|356505572|ref|XP_003521564.1| chr1 59340023 59343321 -
2 domain predictions
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Lj5g3v1630000.1
n.a. PREDICTED: E3 ubiquitin-protein ligase BAH1-like isoform X1 [Cicer arietinum] gi|502117818|ref|XP_004495961.1| chr5 23608537 23612012 +
2 domain predictions
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LotjaGi1g1v0741800.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT2G38920.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-like protein; Swiss-Prot: sp|Q8GW10|BAH1L_ARATH Probable E3 ubiquitin-protein ligase BAH1-like; TrEMBL-Plants: tr|A0A151TVX6|A0A151TVX6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0741800 LjG1.1_chr1 131564671 131568283 -
2 domain predictions
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LotjaGi1g1v0765300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765300 LjG1.1_chr1 133847453 133850911 -
2 domain predictions
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LotjaGi1g1v0765300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765300 LjG1.1_chr1 133847735 133850702 -
2 domain predictions
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LotjaGi5g1v0251200.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|I1JQL7|I1JQL7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 LjG1.1_chr5 55951177 55954770 +
2 domain predictions
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LotjaGi5g1v0251200.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0251200 LjG1.1_chr5 55951498 55953626 +
2 domain predictions
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