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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765300 |
| Transcript ID | LotjaGi1g1v0765300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133847453..133850911) extracted from Lotus japonicus Gifu genome v1.2.
AAGGAGTGACTGACATCTTTCCTTTTTCCTCTCATTACAAGGTCGGAAGTAAATTCATATATTATAAACACAGAGACCAG GTTCAATTCGACTCACCTAGTCCTTAACCAAAACCTCATTCATTGTTCAGGCTCCTGATTTTCTTTTTCCCAGGAGATTC ATTCATTGCTTGAAGGACTGTCTGTGTTGTTCGATGTTATTGGGAAAACATGAAGTTCTGCAAAAAATACCAGGAGTACA TGCAAGGCCAGGACCTGGAGAAGAAAAAGCTTCCTGCTGTTGGCTTCAAAAACCTCAAAAAGATCTTGAAAAAGTGCAGG AGAGACTGTGAATCTCTCTGTCAATCCCAGAAAAACATTCAAGCAGCTGAAGCTGCAGCCTCCCCTGGCCTCAGAACCTG CCCTGATCACTGCTCAGGTAATCAAAATCTTCCATTTTCTCTTCTCTGTTTCAAAGTTTTAATCATTTCCCCTTGGCAGA GAAAAATCCTCTGTTTCCTCTGTTGCCTTCCTCTGCATGCATGAATGATATGTTCTAGTTTGTGTAAATGAATACCAATT TTCAAAGCGTTTTTGGACTCTTTTAATAATACTGATGATGAGGTTTTGAATTTTGATTCAGTGTGTGATGGGACCTTCTT CCCTTCCCTTCTCAATGAAATGTCAGAGATAGTTGGCAGCTTCAATCAGCGTGCACAGGAGTTACTGGAGCTGCATCTCG CTTCTGGCGTCAAGAAGTACATTTTCTGGTTCAAAGGCAAATTACGAGGGAATCACACTGCTCTAGTTCAAGAAGGACAA GATCTGGTCAATTATGCACTCATCAATGCCATTGCAATTCGAAAAATACTCAAGAAATATGATAAGGTATGTCTGCCTGT TCTTCTTCTATGGATAAATATTACAATCATCCTGATTTCACAGGTGTTCTAATTTCATGTTGGTTCCATGTTTCGGGGTT TTATAATCAATTCTCATTCATTCACCAGAATCATTTTTAGTGTTTATATAGATGTTTGGCAATCAAAAGGTATATAGAGT AGCTTTTGCGGTTGACATAATCAATTGTGTGATTTCATAATTGGTTTTAAGAACATTAACCTATAGAAATCACTTTTCCC AATTAACGCATCCAAACATAAATTGTTTCACTTTCAACTCATTTGTACCAAAATGAATTCAGACACGCTGATCCAAACCA GCACCATTTAGGTGAAACTTATGAAGAGTTTTATTAATTTTTTTTAATATGCTGTTATTTCTACTTCCATTGCAGATTCA TTCTTCCAAGCAAGGGCAATTGTTCAAGTCTCAATTCCAGAGCATGCACAAGGAAATTCTTCAAAGCCCCTGGCTTTATG AGCTGATGGCTTTCCACATCAATTTACGGGAAACCAAGGTGGAGTCAAGCAAGGCACCTGCTTTGTTTGATCAATTTTTT CTCACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACCTGTCC TATATGCTTGGTAAGTTAGCTTCTATGCATCAGTTGTAGGATGAATTCGATCTCAACTTTTGTGCTTTTGATTTGGATTG GATTGCATATACATTGAGGCTTTCTGTTTGATGATTACTAGCATGTTTGGATCAACTTTTATTTCATCGGAATCAATTAT GAAACCTAGAATCTTTTTACATAAGTTTCTCCCCAGAATTGACTCTTGCTTCAGAACCAATTCCAAACATGCACTACTTC TTGGATGCAAGAAGATCATATGTTAGAATTTTAAACTAGAACAAATGATTTCTACGGGAGTGAATTTACAGTATTGGTAA TGTTTTCTATCGGAAATGGAAAAGCACTTTCATGTATGGTTCTTCACTTATTTATCCATTGATATTGTTCATCTGGCTCC TTCAATGCAGGACACAGTGTTTGATCCAGTTTCACTGACTTGCGGCCATATATTCTGCTATATGTGTGCTTGCTCGGCTG CATCAGTATCTATTGTTGATGGACTTAAGTCAGCCGTTACTAAGCAGAAATGTCCTCTGTGCCGCGAGGTAAGCTACTAG ATATGAAATTTACACTTCATGTTGTCCTACAATCTGATCATTTGCAACCAGTCATGGAATTTACACGTCAAGCTCTTAAA CAACTTGATTATTTGAGAACGGGATTGTGAAACATGGGAGAATTTTTAGTTTAATTGATTCCATAACTTGTGTTAAAAAG GGTATATAGACCATATGAATAACTTATGATTTCACCCTTTACTGGTGATTAGAGCCAGCCAAGGTATTTCTCCCTTGTCT GGATCCTATTCTAAGCTTCATGTTCCACTTAGAATAACAAATTCTCACTTATAAAATGTAGGTTCTCTCTTTTGATTTGA GATTTGTGGTTTACATTAATTTCTTAAAAATTTTGTGTTGTAATACTGTTGTATCATGTCCTATAGTTCTTAATACTTGT CATAATATCCCTCATGTTGTATTTTAGTTTTAAATGCATGTTCCATGTGAAATTTGCTAGAGCTCAAATTTTAAGGCCTG TCTATGAAGTTTTCCTACCTAATAATTAGATCTTCCAGAATGAGCAAACCTAATATTTGAACTAATTAAAATAATTGCCA ACTTATACTGAGTTCTACTTTGGATGTTGACAGAATGCTGTCTATGAAGGTGCTGTGCACTTGGAAGAACTAAACATTCT GTTAGGCCGAAGGTATAAAATTAGACTTTGTTCTACAATTTGAAATCTCTTATCCCTAAATTGTGTCTCATTCTCTGCTC TACTAATAAAATTTGGGCATATGCCAATTAAAAACTATCATGTAAGTTTGTAATATTTTGTCTACTTGTGTCTTTTTTAA TTGACATGACAAAATTTCATTGGTGGGTCAAGAAATTGAGATACGATTTGGAGACAAAAAAACTTTATCCTTTGTTCCAT TATATAACTCATGATTTTTTTAATTTGGGAGGGTCAAATCAGTTACTTCGTCTTGTGTCTTATTGCAAGTCTTTTGATCT AAAAATATCAAAAATATCAATACTCTTACAGATGTCCAGAATACTGGGAGCAAAGACTTCAGTCAGAGAGGGTAGAGAGG GTTAAGCAAATAAAGGAACATTGGGAATCACAGTGCAGAGCATTCCTGGGTGTATAATTGTAGTTTTAGGCTAGAAGGCC TCATACATTTGTTTGATTATAGTTTTACATGTGTTTCTTATGATCATTGTAAAGAAAGTGAATGTGCTTTCAAACTATCT GTAAGGTTATCAATGGAGTGTTCTTCAATAAGGGATTATTATTATATTACCCTGTTACTTAACCTATTTTTGGTCTATTT ATTTTATTGAAACAGCTTACTCATACATGTATTTGAATAATTTAATTAAGAACTTCAGTGTTTTCAGATGATTATTAATA GTATGAAAGTTGAATCGTA
CDS sequence (LotjaGi1g1v0765300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGACCTGGAGAAGAAAAAGCTTCCTGCTGTTGGCTTCAA AAACCTCAAAAAGATCTTGAAAAAGTGCAGGAGAGACTGTGAATCTCTCTGTCAATCCCAGAAAAACATTCAAGCAGCTG AAGCTGCAGCCTCCCCTGGCCTCAGAACCTGCCCTGATCACTGCTCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTC AATGAAATGTCAGAGATAGTTGGCAGCTTCAATCAGCGTGCACAGGAGTTACTGGAGCTGCATCTCGCTTCTGGCGTCAA GAAGTACATTTTCTGGTTCAAAGGCAAATTACGAGGGAATCACACTGCTCTAGTTCAAGAAGGACAAGATCTGGTCAATT ATGCACTCATCAATGCCATTGCAATTCGAAAAATACTCAAGAAATATGATAAGATTCATTCTTCCAAGCAAGGGCAATTG TTCAAGTCTCAATTCCAGAGCATGCACAAGGAAATTCTTCAAAGCCCCTGGCTTTATGAGCTGATGGCTTTCCACATCAA TTTACGGGAAACCAAGGTGGAGTCAAGCAAGGCACCTGCTTTGTTTGATCAATTTTTTCTCACATTTAAGGATGGAAAAC CATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGACCTGTCCTATATGCTTGGACACAGTGTTT GATCCAGTTTCACTGACTTGCGGCCATATATTCTGCTATATGTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGG ACTTAAGTCAGCCGTTACTAAGCAGAAATGTCCTCTGTGCCGCGAGAATGCTGTCTATGAAGGTGCTGTGCACTTGGAAG AACTAAACATTCTGTTAGGCCGAAGATGTCCAGAATACTGGGAGCAAAGACTTCAGTCAGAGAGGGTAGAGAGGGTTAAG CAAATAAAGGAACATTGGGAATCACAGTGCAGAGCATTCCTGGGTGTATAA
Protein sequence (LotjaGi1g1v0765300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFCKKYQEYMQGQDLEKKKLPAVGFKNLKKILKKCRRDCESLCQSQKNIQAAEAAASPGLRTCPDHCSVCDGTFFPSLL NEMSEIVGSFNQRAQELLELHLASGVKKYIFWFKGKLRGNHTALVQEGQDLVNYALINAIAIRKILKKYDKIHSSKQGQL FKSQFQSMHKEILQSPWLYELMAFHINLRETKVESSKAPALFDQFFLTFKDGKPSLTCELFDSIKIDIDLTCPICLDTVF DPVSLTCGHIFCYMCACSAASVSIVDGLKSAVTKQKCPLCRENAVYEGAVHLEELNILLGRRCPEYWEQRLQSERVERVK QIKEHWESQCRAFLGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 336 | 336 | 3.4E-179 | ||
| ProSiteProfiles | 1 | 163 | 163 | 16.168 | ||
| PANTHER | 1 | 336 | 336 | 3.4E-179 | – | |
| CDD | 2 | 159 | 158 | 7.29408E-82 | – | |
| Gene3D | 211 | 334 | 124 | 1.6E-17 | ||
| SUPERFAMILY | 225 | 285 | 61 | 9.98E-15 | – | |
| Pfam | 229 | 283 | 55 | 1.6E-7 | – | |
| SMART | 232 | 280 | 49 | 7.5E-9 | ||
| ProSiteProfiles | 232 | 281 | 50 | 12.327 | ||
| ProSitePatterns | 247 | 256 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0765300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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