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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0765300 |
| Transcript ID | LotjaGi1g1v0765300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase; TAIR: AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein; Swiss-Prot: sp|Q9SRX9|BAH1_ARATH E3 ubiquitin-protein ligase BAH1; TrEMBL-Plants: tr|A0A0L9UA81|A0A0L9UA81_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0765300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:133847735..133850702) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGACCTGGAGAAGAAAAAGCTTCCTGCTGTTGGCTTCAA AAACCTCAAAAAGATCTTGAAAAAGTGCAGGAGAGACTGTGAATCTCTCTGTCAATCCCAGAAAAACATTCAAGCAGCTG AAGCTGCAGCCTCCCCTGGCCTCAGAACCTGCCCTGATCACTGCTCAGGTAATCAAAATCTTCCATTTTCTCTTCTCTGT TTCAAAGTTTTAATCATTTCCCCTTGGCAGAGAAAAATCCTCTGTTTCCTCTGTTGCCTTCCTCTGCATGCATGAATGAT ATGTTCTAGTTTGTGTAAATGAATACCAATTTTCAAAGCGTTTTTGGACTCTTTTAATAATACTGATGATGAGGTTTTGA ATTTTGATTCAGTGTGTGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGAGATAGTTGGCAGCTTCAATCAG CGTGCACAGGAGTTACTGGAGCTGCATCTCGCTTCTGGCGTCAAGAAGTACATTTTCTGGTTCAAAGGCAAATTACGAGG GAATCACACTGCTCTAGTTCAAGAAGGACAAGATCTGGTCAATTATGCACTCATCAATGCCATTGCAATTCGAAAAATAC TCAAGAAATATGATAAGGTATGTCTGCCTGTTCTTCTTCTATGGATAAATATTACAATCATCCTGATTTCACAGGTGTTC TAATTTCATGTTGGTTCCATGTTTCGGGGTTTTATAATCAATTCTCATTCATTCACCAGAATCATTTTTAGTGTTTATAT AGATGTTTGGCAATCAAAAGGTATATAGAGTAGCTTTTGCGGTTGACATAATCAATTGTGTGATTTCATAATTGGTTTTA AGAACATTAACCTATAGAAATCACTTTTCCCAATTAACGCATCCAAACATAAATTGTTTCACTTTCAACTCATTTGTACC AAAATGAATTCAGACACGCTGATCCAAACCAGCACCATTTAGGTGAAACTTATGAAGAGTTTTATTAATTTTTTTTAATA TGCTGTTATTTCTACTTCCATTGCAGATTCATTCTTCCAAGCAAGGGCAATTGTTCAAGTCTCAATTCCAGAGCATGCAC AAGGAAATTCTTCAAAGCCCCTGGCTTTATGAGCTGATGGCTTTCCACATCAATTTACGGGAAACCAAGGTGGAGTCAAG CAAGGCACCTGCTTTGTTTGATCAATTTTTTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATT CTATCAAAATTGATATTGACTTGACCTGTCCTATATGCTTGGTAAGTTAGCTTCTATGCATCAGTTGTAGGATGAATTCG ATCTCAACTTTTGTGCTTTTGATTTGGATTGGATTGCATATACATTGAGGCTTTCTGTTTGATGATTACTAGCATGTTTG GATCAACTTTTATTTCATCGGAATCAATTATGAAACCTAGAATCTTTTTACATAAGTTTCTCCCCAGAATTGACTCTTGC TTCAGAACCAATTCCAAACATGCACTACTTCTTGGATGCAAGAAGATCATATGTTAGAATTTTAAACTAGAACAAATGAT TTCTACGGGAGTGAATTTACAGTATTGGTAATGTTTTCTATCGGAAATGGAAAAGCACTTTCATGTATGGTTCTTCACTT ATTTATCCATTGATATTGTTCATCTGGCTCCTTCAATGCAGGACACAGTGTTTGATCCAGTTTCACTGACTTGCGGCCAT ATATTCTGCTATATGTGTGCTTGCTCGGCTGCATCAGTATCTATTGTTGATGGACTTAAGTCAGCCGTTACTAAGCAGAA ATGTCCTCTGTGCCGCGAGGTAAGCTACTAGATATGAAATTTACACTTCATGTTGTCCTACAATCTGATCATTTGCAACC AGTCATGGAATTTACACGTCAAGCTCTTAAACAACTTGATTATTTGAGAACGGGATTGTGAAACATGGGAGAATTTTTAG TTTAATTGATTCCATAACTTGTGTTAAAAAGGGTATATAGACCATATGAATAACTTATGATTTCACCCTTTACTGGTGAT TAGAGCCAGCCAAGGTATTTCTCCCTTGTCTGGATCCTATTCTAAGCTTCATGTTCCACTTAGAATAACAAATTCTCACT TATAAAATGTAGGTTCTCTCTTTTGATTTGAGATTTGTGGTTTACATTAATTTCTTAAAAATTTTGTGTTGTAATACTGT TGTATCATGTCCTATAGTTCTTAATACTTGTCATAATATCCCTCATGTTGTATTTTAGTTTTAAATGCATGTTCCATGTG AAATTTGCTAGAGCTCAAATTTTAAGGCCTGTCTATGAAGTTTTCCTACCTAATAATTAGATCTTCCAGAATGAGCAAAC CTAATATTTGAACTAATTAAAATAATTGCCAACTTATACTGAGTTCTACTTTGGATGTTGACAGAATGCTGTCTATGAAG GTGCTGTGCACTTGGAAGAACTAAACATTCTGTTAGGCCGAAGGTATAAAATTAGACTTTGTTCTACAATTTGAAATCTC TTATCCCTAAATTGTGTCTCATTCTCTGCTCTACTAATAAAATTTGGGCATATGCCAATTAAAAACTATCATGTAAGTTT GTAATATTTTGTCTACTTGTGTCTTTTTTAATTGACATGACAAAATTTCATTGGTGGGTCAAGAAATTGAGATACGATTT GGAGACAAAAAAACTTTATCCTTTGTTCCATTATATAACTCATGATTTTTTTAATTTGGGAGGGTCAAATCAGTTACTTC GTCTTGTGTCTTATTGCAAGTCTTTTGATCTAAAAATATCAAAAATATCAATACTCTTACAGATGTCCAGAATACTGGGA GCAAAGACTTCAGTCAGAGAGGGTAGAGAGGGTTAAGCAAATAAAGGAACATTGGGAATCACAGTGCAGAGCATTCCTGG GTGTATAA
CDS sequence (LotjaGi1g1v0765300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGTTCTGCAAAAAATACCAGGAGTACATGCAAGGCCAGGACCTGGAGAAGAAAAAGCTTCCTGCTGTTGGCTTCAA AAACCTCAAAAAGATCTTGAAAAAGTGCAGGAGAGACTCCTCCCCTGGCCTCAGAACCTGCCCTGATCACTGCTCAGTGT GTGATGGGACCTTCTTCCCTTCCCTTCTCAATGAAATGTCAGAGATAGTTGGCAGCTTCAATCAGCGTGCACAGGAGTTA CTGGAGCTGCATCTCGCTTCTGGCGTCAAGAAGTACATTTTCTGGTTCAAAGGCAAATTACGAGGGAATCACACTGCTCT AGTTCAAGAAGGACAAGATCTGGTCAATTATGCACTCATCAATGCCATTGCAATTCGAAAAATACTCAAGAAATATGATA AGATTCATTCTTCCAAGCAAGGGCAATTGTTCAAGTCTCAATTCCAGAGCATGCACAAGGAAATTCTTCAAAGCCCCTGG CTTTATGAGCTGATGGCTTTCCACATCAATTTACGGGAAACCAAGGTGGAGTCAAGCAAGGCACCTGCTTTGTTTGATCA ATTTTTTCTCACATTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCTATCAAAATTGATATTGACTTGA CCTGTCCTATATGCTTGGACACAGTGTTTGATCCAGTTTCACTGACTTGCGGCCATATATTCTGCTATATGTGTGCTTGC TCGGCTGCATCAGTATCTATTGTTGATGGACTTAAGTCAGCCGTTACTAAGCAGAAATGTCCTCTGTGCCGCGAGAATGC TGTCTATGAAGGTGCTGTGCACTTGGAAGAACTAAACATTCTGTTAGGCCGAAGATGTCCAGAATACTGGGAGCAAAGAC TTCAGTCAGAGAGGGTAGAGAGGGTTAAGCAAATAAAGGAACATTGGGAATCACAGTGCAGAGCATTCCTGGGTGTATAA
Protein sequence (LotjaGi1g1v0765300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKFCKKYQEYMQGQDLEKKKLPAVGFKNLKKILKKCRRDSSPGLRTCPDHCSVCDGTFFPSLLNEMSEIVGSFNQRAQEL LELHLASGVKKYIFWFKGKLRGNHTALVQEGQDLVNYALINAIAIRKILKKYDKIHSSKQGQLFKSQFQSMHKEILQSPW LYELMAFHINLRETKVESSKAPALFDQFFLTFKDGKPSLTCELFDSIKIDIDLTCPICLDTVFDPVSLTCGHIFCYMCAC SAASVSIVDGLKSAVTKQKCPLCRENAVYEGAVHLEELNILLGRRCPEYWEQRLQSERVERVKQIKEHWESQCRAFLGV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 319 | 319 | 3.7E-176 | ||
| PANTHER | 1 | 319 | 319 | 3.7E-176 | – | |
| ProSiteProfiles | 1 | 146 | 146 | 15.999 | ||
| CDD | 2 | 142 | 141 | 4.57427E-80 | – | |
| Gene3D | 194 | 317 | 124 | 1.4E-17 | ||
| SUPERFAMILY | 208 | 268 | 61 | 9.15E-15 | – | |
| Pfam | 212 | 266 | 55 | 1.4E-7 | – | |
| SMART | 215 | 263 | 49 | 7.5E-9 | ||
| ProSiteProfiles | 215 | 264 | 50 | 12.327 | ||
| ProSitePatterns | 230 | 239 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0765300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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