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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035980
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 4 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 7.577s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi2g1v0223300.1
n.a. 30S ribosomal protein S6; TAIR: AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|B0TE72|RS6_HELMI 30S ribosomal protein S6; TrEMBL-Plants: tr|I3S8R0|I3S8R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0223300 LjG1.1_chr2 67930370 67933595 -
2 domain predictions
4 GO terms
LotjaGi3g1v0329300.1
n.a. 30S ribosomal protein S6; TAIR: AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q9UT82|RT06_SCHPO 37S ribosomal protein MRP17, mitochondrial; TrEMBL-Plants: tr|I3S8R0|I3S8R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0329300 LjG1.1_chr3 69684287 69697307 +
2 domain predictions
4 GO terms
LotjaGi3g1v0329300.2
n.a. 30S ribosomal protein S6; TAIR: AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q9UT82|RT06_SCHPO 37S ribosomal protein MRP17, mitochondrial; TrEMBL-Plants: tr|I3S8R0|I3S8R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0329300 LjG1.1_chr3 69684454 69696801 +
2 domain predictions
4 GO terms
LotjaGi6g1v0261500.1
n.a. 30S ribosomal protein S6; TAIR: AT3G17170.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q0VMF9|RS6_ALCBS 30S ribosomal protein S6; TrEMBL-Plants: tr|I3T7U7|I3T7U7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0261500 LjG1.1_chr6 57403094 57406379 -
2 domain predictions
4 GO terms