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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0261500 |
| Transcript ID | LotjaGi6g1v0261500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 30S ribosomal protein S6; TAIR: AT3G17170.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q0VMF9|RS6_ALCBS 30S ribosomal protein S6; TrEMBL-Plants: tr|I3T7U7|I3T7U7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0261500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:57403094..57406379) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGTGACCAAATGTGAATTGCAGTTGGTACTCAAAACTCACTCCTCTTTGGCTATGGAGGCACTGTTTCAGGGTTCAT GTCTTGCTCCTTCTTATCCTCTACTCGAGCTTCCAAAATCCACCACCATGTTAACCAACTGCGTCAAGTTCAATCTCAGT CACAACCCATGCTTCATCTTCGCAAATTCTTCACGGCCATTTTCTGCTCAGAGTAAGCCCAGAAAACCATTTTCAGTCAT CGTGAATGCCCAGAAGAAGGACAAGAAAGAAGATCACCATAGCTTCGTATCCAAACCTGATGAGTCTGCTGGTTTCTTCC CTGAAGCTGTGCTTCTTAAAAAGGTCTCTCTTTTACTCATACTCATGACTGATTTGGTTTTGTTAGTGTAATCTTCTCGA GTAGTGCAGGTTTTTGTGTATTTTGTTTTGAGAATATGATACCCTTTTGACTTAATTGGTGTTTTTCTGTTGCAAAATCT TATCTTTTTCTGTTTTGGTTTGAAGTGAAAGTTCCTCACAATTAAGGGTTATGAAAAATATGAATTTGCCCATTCTGCAA TATGTGAGCTAGTATTAGAGCCCGTTTGGATGCAAACAAAAAGCACTTATTGGAGCTTATTTAGTGATTATTTTTTTGTA GATAAGCTCTAATAAATTGGTATCCAATGGGGCCTAAATAAGCTTCAATAAGAGTTATTTGGTTTATATCCAAACAGGTA CTCAGACAGCAATAGATATAGCATCCTTGGTGCTTGCCTTGTTTGTTGAATTTTATTTTAACTAGGTCTTTTTTTCTTTA TTATGTGAATTATCTTGCTAATTTATTGAATTGGGGGTTATTTGACTTACCAATTTTCAGAAAATAGTTGAGGAAGATGG TGAGTTTCTCCCGGAGTTCGAAGATGCTGAAGAAAGTGAGTGCTCATAGTTCAGTTATTCAATCTGTCCTAGTTTAGTTT GTTGCGTCTCTTGGTAGGGTAAATGGTTCTGATGGATTACTTTGCTGAGACTATTCCTTATTCCGAATTTCCATTTTGAT TTGCAGGAAAACTATTTGAATCGTTGATGCTTGAAATGGACAGTGATCTGAACGTTGAATTATGTACGTAGATTTGTTCT TCTTTCTGTGAGAGAATTCATTAAACTATTGCACTAATATAATTGCTTAATCACTGGAATTTGTGCACTGTCATTTGTCC ATGACATGTCCATCATCTTGTGGGGGAGTGTTAGAAAAGATGTGTAGCTTCTCAGCTGATGCAATTCTAATCATAGGAAT TGTGTAGCATCTCTTTTGTAATTATTTTATTTGTATACTAGCTGGCAGTTCTTGTATATACATGGTTTGTCAAATAGCAA TAATGTGATGAACCATTTTCTTCTAGCTAGAAGAGTCTGTAGTCCTCTTCATAATAAAAAATGGAGAAGATAAAGAAAAT CTTTTATTAGTGTTACATACCTTTCATTCTGTTAAGTAAAGTCAAATATTTATGTGTGGTCTACCCTAAAAATTCAATAT GTAATATGGCTTCTTATTATAGCTACCTAGTTATCTTCTGCCATTATGTATGAAAATACAAGAGTCTGGTGTCAATCTTT GTCTATATCTCATGGAGCAAGTAAACTCTTATAACTCACAAAAGTATGCTTCTTTGCATGTGCAGTGCGCCACTACGAGA TTGTTTACTTGATTCATGAGAAGCATGAAGAAGAGGTTGCAGCAGTCAATGAGAAAATTCAAGGTAATCTTTCACAATTC ACTTACATCTTTTTCTTTTCCCCAACTGTTCCCTTGATTACCCAATAGAGCCATTTCTTTCTGGGAATCATGTCCTACTC TAGTTATTTCTAAAATGGCTGAAGCTGGCGGTCTGTGACAGATGTAAAATATCTATAATTGGCTAAGTTTTTTCTTGCAA GTTTTATCTGTCTAATTAGCTCTTCAAGGGCACTAGTGACTAACCTAACCTGCCTTTATCAAAAGTTAACAAATCATAGC TGGTAAATACTAAACAGTTTTCCCTAATAACCTATCTGGAATTTTCATGAGGGTTTTTTATTCTTTGTTCCATCTTCTTT CAGTAGGAAGAACAAGCTATGCAATTTTTTTATTACTGTATCCTCTGTGACAATTTTAGATACTCTCTAATGATGGTTAA ATGTAGGTTGTGTAAATATAAGATCTAATAGCATCATACAAAAAAATTACCTGGACAGTAGATAGAGCAAATGCTGGATA TAATAATGATTACTAAGAATTTGCCGCTACTTACACTTTAACCTAAAAAACATCTTTTTAATCTTCTAATAGCAAAAAGC TTGTGAAGTTGTGATTATTCTGGTTATTTTTCTGATGTTTTTGCAAACATTTGCAGACTTTTTGAGGGAGAAGAAAGGCA CGGTGTGGAGATTCAGTGATTGGGGTATGAGAACGCTGGCTTATAAGATAAAGAAAGCTAATAAGGCTCACTACATTTTG ATGAACATTGAGATGGATGCTAAATACATCAACGAGTTCAAGACTTTGTTGGACCAAGATGAAAGAGTTATTCGGCATCT CGTGGTAAAGAGGGATGAGGCAATCACTGAAGATTGCCCTCCTCCACCCGAGTTTCATACTCTGGGTGCAAGTGTGGACG ATGACGACGACGAAGAACTTGATGAAGATTATGATGATGATTGGGATGGTGAAGAGGATGCGGATGGTGAAGATGGCGAT GCTGAATTTATCGTCATAGACGATGACCAAGATGATGTGGATTCTGGAAATGAAACATTGGCAAACGTTAGACAGCCAGA AATGAAGAATTCGAGGACATAGAATGTAGGTAGGGAGGATTTATCTTTTACCCCAGAAAATTTTGTTCCTCTAGTTCCAC AGGAATGCTGAGTAGTTCTGAAAATATATGAAGATCTAAGTAATTACAGTTCGCAGTGTGTAATTCATAAAAGTGCTATT AAGTTGAGCAGTTTTACCAACAATCAAAATCACTTCTTCCACCAAAAAAGTTATTTTTAGTAGTTTCTGTAGAATTGTTT CTCGCCAAAAACGTGAGAACTGATTGAGTTTCCATGCACAATGTGTATCAACTGAAAATAAGTTCAAGATGGGAACCATT CCAAGGATCTAAACTTTTATTTTGAATGCATTACAAGAAGCTTCTTCATTGTAGTACGGAGACGTGGTCAATTAGTCATA CAATGACATCAAACATTTATAAGCCCTTAATTGCTTGTTTTGGATTTAAGCAGCAAAAACAATGTTTTCGTGTTTGAAGA TAATTT
CDS sequence (LotjaGi6g1v0261500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGCACTGTTTCAGGGTTCATGTCTTGCTCCTTCTTATCCTCTACTCGAGCTTCCAAAATCCACCACCATGTTAAC CAACTGCGTCAAGTTCAATCTCAGTCACAACCCATGCTTCATCTTCGCAAATTCTTCACGGCCATTTTCTGCTCAGAGTA AGCCCAGAAAACCATTTTCAGTCATCGTGAATGCCCAGAAGAAGGACAAGAAAGAAGATCACCATAGCTTCGTATCCAAA CCTGATGAGTCTGCTGGTTTCTTCCCTGAAGCTGTGCTTCTTAAAAAGAAAATAGTTGAGGAAGATGGTGAGTTTCTCCC GGAGTTCGAAGATGCTGAAGAAAGAAAACTATTTGAATCGTTGATGCTTGAAATGGACAGTGATCTGAACGTTGAATTAT TGCGCCACTACGAGATTGTTTACTTGATTCATGAGAAGCATGAAGAAGAGGTTGCAGCAGTCAATGAGAAAATTCAAGAC TTTTTGAGGGAGAAGAAAGGCACGGTGTGGAGATTCAGTGATTGGGGTATGAGAACGCTGGCTTATAAGATAAAGAAAGC TAATAAGGCTCACTACATTTTGATGAACATTGAGATGGATGCTAAATACATCAACGAGTTCAAGACTTTGTTGGACCAAG ATGAAAGAGTTATTCGGCATCTCGTGGTAAAGAGGGATGAGGCAATCACTGAAGATTGCCCTCCTCCACCCGAGTTTCAT ACTCTGGGTGCAAGTGTGGACGATGACGACGACGAAGAACTTGATGAAGATTATGATGATGATTGGGATGGTGAAGAGGA TGCGGATGGTGAAGATGGCGATGCTGAATTTATCGTCATAGACGATGACCAAGATGATGTGGATTCTGGAAATGAAACAT TGGCAAACGTTAGACAGCCAGAAATGAAGAATTCGAGGACATAG
Protein sequence (LotjaGi6g1v0261500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEALFQGSCLAPSYPLLELPKSTTMLTNCVKFNLSHNPCFIFANSSRPFSAQSKPRKPFSVIVNAQKKDKKEDHHSFVSK PDESAGFFPEAVLLKKKIVEEDGEFLPEFEDAEERKLFESLMLEMDSDLNVELLRHYEIVYLIHEKHEEEVAAVNEKIQD FLREKKGTVWRFSDWGMRTLAYKIKKANKAHYILMNIEMDAKYINEFKTLLDQDERVIRHLVVKRDEAITEDCPPPPEFH TLGASVDDDDDEELDEDYDDDWDGEEDADGEDGDAEFIVIDDDQDDVDSGNETLANVRQPEMKNSRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 33 | 299 | 267 | 9.0E-123 | – | |
| PANTHER | 33 | 299 | 267 | 9.0E-123 | ||
| Gene3D | 130 | 232 | 103 | 6.9E-27 | ||
| SUPERFAMILY | 134 | 234 | 101 | 1.83E-31 | ||
| Hamap | 134 | 227 | 94 | 18.921 | ||
| TIGRFAM | 135 | 226 | 92 | 6.9E-27 | ||
| Pfam | 136 | 224 | 89 | 1.4E-24 | ||
| CDD | 136 | 225 | 90 | 9.7839E-30 | ||
| Coils | 144 | 164 | 21 | - | – | |
| MobiDBLite | 230 | 307 | 78 | - | – | |
| MobiDBLite | 245 | 289 | 45 | - | – | |
| MobiDBLite | 290 | 307 | 18 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Ribosome | An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins. | ||
| Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
| Molecular function | RRNA binding | Interacting selectively and non-covalently with ribosomal RNA. |
Expression pattern of LotjaGi6g1v0261500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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