Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

GO:0019843

View this GO term in other databases

Overview

Field Value
Namespace Molecular function
Short description RRNA binding
Full defintion Interacting selectively and non-covalently with ribosomal RNA.
Subterm of

Relationships

The relationship of GO:0019843 with other GO terms.

Relationship type GO terms
Is a
Regulates n.a.
Part of n.a.
Positively regulates n.a.
Negatively regulates n.a.

Ancestor tree

A force layout showing the ancestor tree for GO:0019843, and its immediate children. If you wish to explore the tree dynamically, please use the GO Explorer.

  • Drag and drop nodes to manually position (i.e. fix) them
  • Double click on a node to unfix the node
  • Press Alt and double click to visit the page containing further details of a GO term
  • Right clicking on a node will reveal a context menu

Controls

Force layout

Every force layout is different—we have picked a set of parameters which suits most GO ancestor tree chart well. If you mess something up—don't worry: hitting the "reset view" button above will reset the chart to its default layout.

Additional data

This table contains additional metadata associated with the GO entry's definition field.

Field Value
GOCjl

Associated Lotus transcripts 43

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Transcript Name Description GO terms GO count
Lj0g3v0012679.1
– PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] gi|449438739|ref|XP_004137145.1|
GO terms
4
Lj0g3v0054209.1
– Ribosomal protein S4 [Lotus japonicus] gi|13518426|ref|NP_084786.1|
GO terms
1
Lj0g3v0080839.1
– PREDICTED: 40S ribosomal protein S9-2-like [Glycine max] gi|356562820|ref|XP_003549666.1|
GO terms
1
Lj0g3v0091599.1
– PREDICTED: 50S ribosomal protein L6, chloroplastic-like isoform 1 [Glycine max] gi|356559805|ref|XP_003548187.1|
GO terms
4
Lj0g3v0176029.1
– PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] gi|449438739|ref|XP_004137145.1|
GO terms
4
Lj0g3v0205889.1
– 30S ribosomal protein S6 [Medicago truncatula] gi|357448827|ref|XP_003594689.1|
GO terms
4
Lj0g3v0292979.1
– PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Glycine max] gi|356535851|ref|XP_003536456.1|
GO terms
1
Lj1g3v1091360.1
– 60S ribosomal protein l9 [Medicago truncatula] gi|357490415|ref|XP_003615495.1|
GO terms
4
Lj1g3v2095640.1
– PREDICTED: 50S ribosomal protein 6, chloroplastic-like [Cicer arietinum] gi|502131726|ref|XP_004501081.1|
GO terms
5
Lj2g3v0360370.1
– 60S ribosomal protein l9 [Medicago truncatula] gi|357490415|ref|XP_003615495.1|
GO terms
4
Lj2g3v1415100.1
– PREDICTED: 60S ribosomal protein L6, mitochondrial-like [Cucumis sativus] gi|449451529|ref|XP_004143514.1|
GO terms
4
Lj4g3v1107380.3
– PREDICTED: 60S ribosomal protein L9-like [Cucumis sativus] gi|449438739|ref|XP_004137145.1|
GO terms
4
Lj4g3v1635200.1
– PREDICTED: 40S ribosomal protein S9-2-like [Cicer arietinum] gi|502152082|ref|XP_004508755.1|
GO terms
1
Lj4g3v3014330.1
– Translation elongation factor EF1B/ribosomal protein S6 family protein [Arabidopsis thaliana] gi|15217660|ref|NP_176632.1|
GO terms
4
LotjaGi1g1v0060400.1
– 50S ribosomal protein L20; TAIR: AT1G16740.1 Ribosomal protein L20; Swiss-Prot: sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20; TrEMBL-Plants: tr|I3T7U6|I3T7U6_LOTJA 50S ribosomal protein L20; Found in the gene: LotjaGi1g1v0060400
GO terms
4
LotjaGi1g1v0060400.2
– 50S ribosomal protein L20; TAIR: AT1G16740.1 Ribosomal protein L20; Swiss-Prot: sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20; TrEMBL-Plants: tr|I3T7U6|I3T7U6_LOTJA 50S ribosomal protein L20; Found in the gene: LotjaGi1g1v0060400
GO terms
4
LotjaGi1g1v0060600.1
– 50S ribosomal protein L20; TAIR: AT1G16740.1 Ribosomal protein L20; Swiss-Prot: sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20; TrEMBL-Plants: tr|I3T7U6|I3T7U6_LOTJA 50S ribosomal protein L20; Found in the gene: LotjaGi1g1v0060600
GO terms
4
LotjaGi1g1v0060600.2
– 50S ribosomal protein L20; TAIR: AT1G16740.1 Ribosomal protein L20; Swiss-Prot: sp|B6IPJ8|RL20_RHOCS 50S ribosomal protein L20; TrEMBL-Plants: tr|I3T7U6|I3T7U6_LOTJA 50S ribosomal protein L20; Found in the gene: LotjaGi1g1v0060600
GO terms
4
LotjaGi1g1v0060700_LC.1
– 50S ribosomal protein L20; TAIR: AT1G16740.1 Ribosomal protein L20; Swiss-Prot: sp|B2KB85|RL20_ELUMP 50S ribosomal protein L20; TrEMBL-Plants: tr|I3T7U6|I3T7U6_LOTJA 50S ribosomal protein L20; Found in the gene: LotjaGi1g1v0060700_LC
GO terms
4
LotjaGi1g1v0127300.1
– 50S ribosomal protein L6; TAIR: AT1G33120.1 Ribosomal protein L6 family; Swiss-Prot: sp|P30707|RL9_PEA 60S ribosomal protein L9; TrEMBL-Plants: tr|I3SAF6|I3SAF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0127300
GO terms
4
LotjaGi1g1v0127300.2
– 50S ribosomal protein L6; TAIR: AT1G33120.1 Ribosomal protein L6 family; Swiss-Prot: sp|P30707|RL9_PEA 60S ribosomal protein L9; TrEMBL-Plants: tr|I3SAF6|I3SAF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0127300
GO terms
4
LotjaGi1g1v0218000.1
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|I3T2G7|I3T2G7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0218000
GO terms
1
LotjaGi1g1v0301500.1
– 50S ribosomal protein L6; TAIR: AT1G33120.1 Ribosomal protein L6 family; Swiss-Prot: sp|P30707|RL9_PEA 60S ribosomal protein L9; TrEMBL-Plants: tr|I3SAF6|I3SAF6_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0301500
GO terms
4
LotjaGi1g1v0410700_LC.1
– 50S ribosomal protein 6, chloroplastic; TAIR: AT5G17870.1 plastid-specific 50S ribosomal protein 6; Swiss-Prot: sp|Q9FKP0|PSRP6_ARATH 50S ribosomal protein 6, chloroplastic; TrEMBL-Plants: tr|A0A0S3RCL5|A0A0S3RCL5_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410700_LC
GO terms
5
LotjaGi2g1v0143100.1
– 50S ribosomal protein L6; TAIR: AT1G05190.1 Ribosomal protein L6 family; Swiss-Prot: sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic; TrEMBL-Plants: tr|I1MPT8|I1MPT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0143100
GO terms
4
LotjaGi2g1v0143100.2
– 50S ribosomal protein L6; TAIR: AT1G05190.1 Ribosomal protein L6 family; Swiss-Prot: sp|O23049|RK6_ARATH 50S ribosomal protein L6, chloroplastic; TrEMBL-Plants: tr|I1MPT8|I1MPT8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0143100
GO terms
4
LotjaGi2g1v0223300.1
– 30S ribosomal protein S6; TAIR: AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|B0TE72|RS6_HELMI 30S ribosomal protein S6; TrEMBL-Plants: tr|I3S8R0|I3S8R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0223300
GO terms
4
LotjaGi2g1v0322400.1
– 50S ribosomal protein L6, putative; TAIR: AT2G18400.1 ribosomal protein L6 family protein; Swiss-Prot: sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial; TrEMBL-Plants: tr|I3SVR1|I3SVR1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0322400
GO terms
4
LotjaGi2g1v0322700.1
– 50S ribosomal protein L6, putative; TAIR: AT2G18400.1 ribosomal protein L6 family protein; Swiss-Prot: sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial; TrEMBL-Plants: tr|I3SVR1|I3SVR1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0322700
GO terms
4
LotjaGi3g1v0227900.1
– 50S ribosomal protein L16, chloroplastic; TAIR: ATCG00790.1 ribosomal protein L16 (ChrC); Swiss-Prot: sp|Q9BBP9|RK16_LOTJA 50S ribosomal protein L16, chloroplastic; TrEMBL-Plants: tr|I3S6T0|I3S6T0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0227900
GO terms
3
LotjaGi3g1v0227900.2
– 50S ribosomal protein L16, chloroplastic; TAIR: ATCG00790.1 ribosomal protein L16 (ChrC); Swiss-Prot: sp|Q9BBP9|RK16_LOTJA 50S ribosomal protein L16, chloroplastic; TrEMBL-Plants: tr|A0A067KET2|A0A067KET2_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0227900
GO terms
3
LotjaGi3g1v0227900.3
– 50S ribosomal protein L14, chloroplastic; TAIR: ATCG00780.1 ribosomal protein L14 (ChrC); Swiss-Prot: sp|Q9BBQ0|RK14_LOTJA 50S ribosomal protein L14, chloroplastic; TrEMBL-Plants: tr|M7ZR36|M7ZR36_TRIUA 50S ribosomal protein L14, chloroplastic; Found in the gene: LotjaGi3g1v0227900
GO terms
3
LotjaGi3g1v0329300.1
– 30S ribosomal protein S6; TAIR: AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q9UT82|RT06_SCHPO 37S ribosomal protein MRP17, mitochondrial; TrEMBL-Plants: tr|I3S8R0|I3S8R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0329300
GO terms
4
LotjaGi3g1v0329300.2
– 30S ribosomal protein S6; TAIR: AT3G18760.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q9UT82|RT06_SCHPO 37S ribosomal protein MRP17, mitochondrial; TrEMBL-Plants: tr|I3S8R0|I3S8R0_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0329300
GO terms
4
LotjaGi3g1v0492600.1
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi3g1v0492600
GO terms
1
LotjaGi4g1v0130400.1
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
GO terms
1
LotjaGi4g1v0130400.3
– 30S ribosomal protein S4; TAIR: AT5G15750.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein; Swiss-Prot: sp|P32899|IMP3_YEAST U3 small nucleolar ribonucleoprotein protein IMP3; TrEMBL-Plants: tr|I3SIJ8|I3SIJ8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0130400
GO terms
1
LotjaGi4g1v0249100.1
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100
GO terms
1
LotjaGi4g1v0249100.2
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|V7CDF1|V7CDF1_PHAVU Uncharacterized protein; Found in the gene: LotjaGi4g1v0249100
GO terms
1
LotjaGi4g1v0249100.3
– 30S ribosomal protein S4; TAIR: AT5G39850.1 Ribosomal protein S4; Swiss-Prot: sp|Q9FLF0|RS92_ARATH 40S ribosomal protein S9-2; TrEMBL-Plants: tr|A0A0B2SUR7|A0A0B2SUR7_GLYSO 40S ribosomal protein S9-2; Found in the gene: LotjaGi4g1v0249100
GO terms
1
LotjaGi5g1v0091500.1
– Ribosome production factor 2 like; TAIR: AT3G23620.1 Ribosomal RNA processing Brix domain protein; Swiss-Prot: sp|Q9AWM9|RPF2_ORYSJ Ribosome production factor 2 homolog; TrEMBL-Plants: tr|A0A1J7IBE3|A0A1J7IBE3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0091500
GO terms
3
LotjaGi6g1v0261500.1
– 30S ribosomal protein S6; TAIR: AT3G17170.1 Translation elongation factor EF1B/ribosomal protein S6 family protein; Swiss-Prot: sp|Q0VMF9|RS6_ALCBS 30S ribosomal protein S6; TrEMBL-Plants: tr|I3T7U7|I3T7U7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0261500
GO terms
4
LotjaGi6g1v0283300.1
– 50S ribosomal protein L6, putative; TAIR: AT2G18400.1 ribosomal protein L6 family protein; Swiss-Prot: sp|P26861|RM06_MARPO 60S ribosomal protein L6, mitochondrial; TrEMBL-Plants: tr|I3SVR1|I3SVR1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi6g1v0283300
GO terms
4

Co-occuring GO terms 1

A list of co-occurring GO terms within the L. japonicus gene space:

GO term Namespace Name Observations Saturation (%)
GO:0019843
Molecular function RRNA binding 1 2.33