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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR035983
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We have found 29 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.288s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0135300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791156 21808026 +
2 domain predictions
1 GO term
LotjaGi1g1v0135300.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21806305 +
2 domain predictions
1 GO term
LotjaGi1g1v0135300.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
1 GO term
LotjaGi1g1v0135300.4
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|K7M7U0|K7M7U0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
1 GO term
LotjaGi1g1v0135300.5
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1MB15|I1MB15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0135300 LjG1.1_chr1 21791679 21807705 +
2 domain predictions
1 GO term
LotjaGi1g1v0342400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80457990 80472977 +
2 domain predictions
1 GO term
LotjaGi1g1v0342400.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80458458 80472724 +
2 domain predictions
1 GO term
LotjaGi1g1v0342400.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K9T4|I1K9T4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0342400 LjG1.1_chr1 80459623 80472724 +
2 domain predictions
1 GO term
LotjaGi1g1v0559300.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1JSE2|I1JSE2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0559300 LjG1.1_chr1 109179799 109191873 -
2 domain predictions
1 GO term
LotjaGi1g1v0682500.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G53090.1 ubiquitin-protein ligase 7; Swiss-Prot: sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7; TrEMBL-Plants: tr|K7MZ55|K7MZ55_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0682500 LjG1.1_chr1 124979361 124999716 +
2 domain predictions
1 GO term
LotjaGi1g1v0682500.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G53090.1 ubiquitin-protein ligase 7; Swiss-Prot: sp|Q9SCQ2|UPL7_ARATH E3 ubiquitin-protein ligase UPL7; TrEMBL-Plants: tr|A0A151TVC8|A0A151TVC8_CAJCA E3 ubiquitin-protein ligase UPL7; Found in the gene: LotjaGi1g1v0682500 LjG1.1_chr1 124987550 124999477 +
2 domain predictions
1 GO term
LotjaGi3g1v0434700_LC.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT5G02880.1 ubiquitin-protein ligase 4; Swiss-Prot: sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4; TrEMBL-Plants: tr|A0A067K9U6|A0A067K9U6_JATCU Uncharacterized protein; Found in the gene: LotjaGi3g1v0434700_LC LjG1.1_chr3 84634358 84638487 -
2 domain predictions
1 GO term
LotjaGi3g1v0521100.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1LPS2|I1LPS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521100 LjG1.1_chr3 93759665 93770217 -
2 domain predictions
1 GO term
LotjaGi3g1v0521100.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1LPS2|I1LPS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521100 LjG1.1_chr3 93761398 93769932 -
2 domain predictions
1 GO term
LotjaGi3g1v0521100.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1LPS2|I1LPS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521100 LjG1.1_chr3 93761398 93769932 -
2 domain predictions
1 GO term
LotjaGi3g1v0521100.4
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1LPS2|I1LPS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521100 LjG1.1_chr3 93761468 93769932 -
2 domain predictions
1 GO term
LotjaGi3g1v0521100.5
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1LPS2|I1LPS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521100 LjG1.1_chr3 93761468 93769932 -
2 domain predictions
1 GO term
LotjaGi3g1v0521100.6
n.a. E3 ubiquitin-protein ligase; TAIR: AT4G38600.1 HECT ubiquitin protein ligase family protein KAK; Swiss-Prot: sp|Q6WWW4|UPL3_ARATH E3 ubiquitin-protein ligase UPL3; TrEMBL-Plants: tr|I1LPS2|I1LPS2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0521100 LjG1.1_chr3 93761468 93769932 -
2 domain predictions
1 GO term
LotjaGi4g1v0008500.1
n.a. E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|K7MJB8|K7MJB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0008500 LjG1.1_chr4 1164205 1170921 +
2 domain predictions
1 GO term
LotjaGi4g1v0020600.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|I1K373|I1K373_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2550963 2567864 -
2 domain predictions
1 GO term
LotjaGi4g1v0020600.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
1 GO term
LotjaGi4g1v0020600.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT1G55860.1 LOW protein: E3 ubiquitin ligase-like protein; Swiss-Prot: sp|Q8GY23|UPL1_ARATH E3 ubiquitin-protein ligase UPL1; TrEMBL-Plants: tr|A0A0B2R0Y5|A0A0B2R0Y5_GLYSO E3 ubiquitin-protein ligase UPL1; Found in the gene: LotjaGi4g1v0020600 LjG1.1_chr4 2552178 2566487 -
2 domain predictions
1 GO term
LotjaGi4g1v0162300.1
n.a. E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|K7MJB8|K7MJB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0162300 LjG1.1_chr4 30036059 30040148 -
2 domain predictions
1 GO term
LotjaGi5g1v0074600.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT5G02880.1 ubiquitin-protein ligase 4; Swiss-Prot: sp|Q9LYZ7|UPL4_ARATH E3 ubiquitin-protein ligase UPL4; TrEMBL-Plants: tr|K7LZL3|K7LZL3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0074600 LjG1.1_chr5 12374556 12384920 +
2 domain predictions
1 GO term
LotjaGi6g1v0262400.1
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G17205.1 ubiquitin protein ligase 6; Swiss-Prot: sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6; TrEMBL-Plants: tr|V7BS42|V7BS42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0262400 LjG1.1_chr6 57530428 57558357 +
2 domain predictions
1 GO term
LotjaGi6g1v0262400.2
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G17205.1 ubiquitin protein ligase 6; Swiss-Prot: sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6; TrEMBL-Plants: tr|V7BS42|V7BS42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0262400 LjG1.1_chr6 57530740 57557186 +
2 domain predictions
1 GO term
LotjaGi6g1v0262400.3
n.a. E3 ubiquitin-protein ligase; TAIR: AT3G17205.1 ubiquitin protein ligase 6; Swiss-Prot: sp|Q8RWB8|UPL6_ARATH E3 ubiquitin-protein ligase UPL6; TrEMBL-Plants: tr|V7BS42|V7BS42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi6g1v0262400 LjG1.1_chr6 57530740 57557186 +
2 domain predictions
1 GO term
LotjaGi6g1v0286600_LC.1
n.a. E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|A0A151SU57|A0A151SU57_CAJCA E3 ubiquitin-protein ligase UPL5; Found in the gene: LotjaGi6g1v0286600_LC LjG1.1_chr6 60394716 60395216 +
2 domain predictions
1 GO term
LotjaGi6g1v0286700.1
n.a. E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|K7L3Y8|K7L3Y8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0286700 LjG1.1_chr6 60405788 60413910 +
2 domain predictions
1 GO term