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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0162300 |
| Transcript ID | LotjaGi4g1v0162300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase-like protein; TAIR: AT4G12570.1 ubiquitin protein ligase 5; Swiss-Prot: sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5; TrEMBL-Plants: tr|K7MJB8|K7MJB8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0162300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:30036059..30040148) extracted from Lotus japonicus Gifu genome v1.2.
CTCTGGGTCAACGCCGGAGCTCCGGTGGCCCATGTGGCATGGCCACGTCAGTTTAATACATTGACATGGAATTTTTTTTT CTTCATTTTAATTAAATTATTAAAAAACATAATTAATTAAGTAAATAAAAAAAAAACCTAATCTAGTAATTCCATCATCT TCACACGGACTTCACCCTCCTCACATCAACATCTTCACCCTCCTCACATCTACATCTTCACTGGTTTCATCATCACAAAC CTAATTCCAATTCAAATCTTCACTAGCTTCCTCCTCCAACTTTTCATTCTGATCCAGATCTGTGTCTCTCACAACTTCAG GGATGTACCTGGGTGCTGCGTTGGGCATGCTTTTGCTTCCGATTTTCTGGGTTTTTTGTGAAGCTCGATGGTCATGGTGG TGGAACAAGGTGGCTTTAGTGAGAAAGGTGGTGACTTTCTGGCGGAGGAGGCGTTCATTGTTCAGGGGAGGCTTCTCCTC TCTGCTTCATGTTTTTTTGTTGCTGTATTCGAGCAACTCTGTTTTGCTCTGTTCCTTGTCTTGTTTTGAGGGTGGGAACC ACTCGCGGGTCTGGAGAAGGATGTCGGATCCATAAGTGGGTTGCAGAGAGAGCGCTAAACAAGACATTGTCGCAGATTGG AATCGCTGATCGGAGTTGTTATTTATACATCTGGAATCATATGTTGCTAGTTTCATTGTATATGCCCTTAAGTTAAATCC TTATCAACTTGGCTTTGGTTTATTCCTCTGTATATATTGTCGCCCAATTTGCCCCAACTTGGCTTTGGTCTATGAAGTTG TGATCCAGATCTGTGAAGGAACTACGGTATATATATTCTCTGTATAATTTGTCACCCAATCTCCACAAATTCTCTGTATA TAATTTGTCACCCCATCTCCACAAATTCTCTGTATAATTTTAGATTTGAGTTTTATTTTATGAGGATTAGAGGTTATTTT CTGGGTTTTGTTGAAGATGATGGATGAAGATGATGAAGGTGATTTTTTTATAATCAGATGGTGAAAATGATGAAGAAGGA TTAGAGTTAAAAAAGTTAGGACTAAAATTAAAGATTTGATTAGGGATTAAAGTTAAATTAATTAGGTTTTAAAACAATTT TTTTAAAAAAATTAATTAGGTTTTTTAATTTTAAAGAAAAATAAATTCCACGTCAGCTCATTAAACTGACGTGACATTAC CACATGGGCCACCGGAGCTCCGGCGTTGACCCAGAGCTCCGGAGGGATGAAAACCAAACCTTTTAGCAAAGGTTAGCGAC TAAAACCCACCTTTACTCCGGCGAGGATGAAAACCAAACATATGGTAAAGGTTAGGGATCAAAATCTTATTTAAGCTTAA ATAGAACTTCTCATTCTCTTCCTCTTGACAAACACACCGCCCTTCTGTCATGGAAAACCCCAGCGTCGAGCACCGTAACC CTTCTACGCCCAAATTCTACGACGGCGACGACGTCGTCTCCGACTTAGTCTGCGTGAGGATTACCCAGGACGATACCGTC AAGGCCGTTAACACCTTGTCCTCCGCCGCCGCCCACCGATCAAACCCGCTACAGTTCTCCGTTCGTATGATCTCTGGTGG AAGCACCATGGTTATGCAAGCGTATCCCGAAGAAACAGTCCAATCGATTCTCGAGCGTATCGAGACCTTGAAGCGAATCC CTATTTCTGAACAGAGGTTGATTTTCATGGGGAAGCAGCTTCAGAGGGAGAAGACTCTCGCCGAATGTTCCATCCAAAAC GGCGTCAATCTTCAACTCGTTTGTCGCATGCGCCCCACCGGACACCCTCAGGCATGGCAGGTCATAAACGACATGGTCTC CGTCGTTCTCAAACTCTACCACGGCGGAGTTGTTCCCGGCGCTGTGAAAACCATCAAGGGCTTCATCACGACCTACCTCA ACATGGCGCCAAGGATTGACGACAAGGATTCTGCTTCCGGGTATTTTCAGATTTTCCGGTCTTGCTCCGCCGTGCTTGTC TCGCTGTATCTGTCCCCGTTCACGGGTAATAAGGATTGTGCTGATTCTTCTGTTAGGCATTTTTTAACCTCTTGTAGGAA CACCCTTTCTGTGTCCCTGCACGCGCAGTGTGCGCGTGTGGTCTTGGAGTTTTGTACATTGCTTAGGGTTAGGGGTAGGG TGATAGGTTCTGAGGATCCTTTGTATCTCTTCTGCAGGAGTACTCTTGGGTCATTGTTGGAAACTGCTAGGGTTTCGTGT GCTGCTTCTGAGATTGACAATGCTAAAGAGGAGATCATTTTTGTTCAAGATATATTGCCTTTTGTTAGGGAGCTTGCTAA GAGGTTGTTGGTGGATTTGGATTTGAGTATGATATCCCCCTCCACTGTGGGGACTTTGTTTAACAATGTTGGGGATTTTA CTGCGTTCTTGATCCCTTTGAGGAAAGGAATTATGGAGCAACAAGCTCTCAAGGATGTGTTGCTCGTGGGAGAGGTTGAA GAAGACCTTCTTGGCTTGTACAATGATTTATTGAGCAAAATTGATCAGTGCCTTCAATACTTGGGGCAGAGATGGGCTGG CCATGAAATGATGCAAAGGGATGATCATGATCTTGATTGGTCTCATTATCTTTCCATTTTGAAGGAATTGTATCTGATTT CTAAGCTTTATGATGGTGCTGAAGAAAAGCTCTGGAATGTTTTGATGTGTCATAGAAGCGTGCTGTGTTTGCTGATTGTT CGATATGCAAAGAGGACTGGTGAGCATCAGTGGATTCTCGAGCACAAGCCTGTGACGGATTTTGAGTCTAGGAGGCATTT GGCAATGCTGATGTTCCCAGAGGTAATCGAAGACTACGAGGAAATGTACGAGATGCTTATTGACAGGTCTCAGTTATTGA GTGAATCTTTTGAGTACATAGCACGAGCTGATCCTGAATCGCTGAAAGCTGGCCTATTCATAAAATTCAAAAATGAGGAA GTCACTGGCCCAAGTGTAGTAAGGGAATGGTTTCTTTTGGTATGTCAAGCGATATTCAACCCGCAAAATGCACTTTTTCT GGCATGCCCCCATAATCCAAGGAGATTTTACCCCAACCCTGCTTCTAAGGTAAATCCTCAGCACCTTGAGTACTTCAGCT TCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTACAAGTGGGTATTGTTTTGGATCGTGTGTTTTTCTTGCAA TTGGCTGGGAAGTATGTTACTTTAGAAGACATAAAGGATGCAGATCCAAACTTATATACTAGATGCAAGCAAATATTAGA CATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACTTTTGTTAGAGAGGCGGAGGAATTAGGACACACAAAAG TGGTTGAGCTCTCCTTGTAGTTAATAGTAAGAACAGGGAGATGTATATTGATCTTCTTATAAGGGACCGTTTTGTAACAT CCACATCCGAGCAGGTGTCATATTTTGCCCATGGTTTTGCTGATATTCTTTCAAGCTCAAAGCTTCAGCAATTCTTCTTT CAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTACGTGGGAGTGAAGATTTCAAACTCGGCAACTGACAGACCATGTA CATTAATGCTGAATCTGACTAATCATGAAAACTGATTTCCTATATAACGGTGATGAGAATCAAGGGCTCAAGGCATACCA TAATTTAGTTTAGTTGATATTTGGCTTATCAAAAAAAAAAGTTTAGTTGATATTTTATTTGGATAAATTTTATTTTATTT TGACAAGATGTTAGTTTCGTTTTTATTTTATTTGGGTAAGTTTTTATTTTATCTAGATATGTTAGTTTATTTGGAAAAGT TGTTATTTTATTTTATCAGGTTTGGTCTTTACAAGAGATTAAGAGGTAACTTGAATTGAGTTTAGTTATTGAGGTTTATT TCCTCTTGTGTGTGCGGCACGCCTCCATGCAGGTTCTTGCAGAACCACCTCGATTTTATGGTGATCAACTGATCATCGTT TGGCTTATCATTCTCCTTGATTGTTGCGTCTTCGTCATGTATTCTCTCATTCGTATTTTTATTAATTTTCTTTGAATTCT TTCTTAAGTA
CDS sequence (LotjaGi4g1v0162300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAACCCCAGCGTCGAGCACCGTAACCCTTCTACGCCCAAATTCTACGACGGCGACGACGTCGTCTCCGACTTAGT CTGCGTGAGGATTACCCAGGACGATACCGTCAAGGCCGTTAACACCTTGTCCTCCGCCGCCGCCCACCGATCAAACCCGC TACAGTTCTCCGTTCGTATGATCTCTGGTGGAAGCACCATGGTTATGCAAGCGTATCCCGAAGAAACAGTCCAATCGATT CTCGAGCGTATCGAGACCTTGAAGCGAATCCCTATTTCTGAACAGAGGTTGATTTTCATGGGGAAGCAGCTTCAGAGGGA GAAGACTCTCGCCGAATGTTCCATCCAAAACGGCGTCAATCTTCAACTCGTTTGTCGCATGCGCCCCACCGGACACCCTC AGGCATGGCAGGTCATAAACGACATGGTCTCCGTCGTTCTCAAACTCTACCACGGCGGAGTTGTTCCCGGCGCTGTGAAA ACCATCAAGGGCTTCATCACGACCTACCTCAACATGGCGCCAAGGATTGACGACAAGGATTCTGCTTCCGGGTATTTTCA GATTTTCCGGTCTTGCTCCGCCGTGCTTGTCTCGCTGTATCTGTCCCCGTTCACGGGTAATAAGGATTGTGCTGATTCTT CTGTTAGGCATTTTTTAACCTCTTGTAGGAACACCCTTTCTGTGTCCCTGCACGCGCAGTGTGCGCGTGTGGTCTTGGAG TTTTGTACATTGCTTAGGGTTAGGGGTAGGGTGATAGGTTCTGAGGATCCTTTGTATCTCTTCTGCAGGAGTACTCTTGG GTCATTGTTGGAAACTGCTAGGGTTTCGTGTGCTGCTTCTGAGATTGACAATGCTAAAGAGGAGATCATTTTTGTTCAAG ATATATTGCCTTTTGTTAGGGAGCTTGCTAAGAGGTTGTTGGTGGATTTGGATTTGAGTATGATATCCCCCTCCACTGTG GGGACTTTGTTTAACAATGTTGGGGATTTTACTGCGTTCTTGATCCCTTTGAGGAAAGGAATTATGGAGCAACAAGCTCT CAAGGATGTGTTGCTCGTGGGAGAGGTTGAAGAAGACCTTCTTGGCTTGTACAATGATTTATTGAGCAAAATTGATCAGT GCCTTCAATACTTGGGGCAGAGATGGGCTGGCCATGAAATGATGCAAAGGGATGATCATGATCTTGATTGGTCTCATTAT CTTTCCATTTTGAAGGAATTGTATCTGATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTCTGGAATGTTTTGATGTG TCATAGAAGCGTGCTGTGTTTGCTGATTGTTCGATATGCAAAGAGGACTGGTGAGCATCAGTGGATTCTCGAGCACAAGC CTGTGACGGATTTTGAGTCTAGGAGGCATTTGGCAATGCTGATGTTCCCAGAGGTAATCGAAGACTACGAGGAAATGTAC GAGATGCTTATTGACAGGTCTCAGTTATTGAGTGAATCTTTTGAGTACATAGCACGAGCTGATCCTGAATCGCTGAAAGC TGGCCTATTCATAAAATTCAAAAATGAGGAAGTCACTGGCCCAAGTGTAGTAAGGGAATGGTTTCTTTTGGTATGTCAAG CGATATTCAACCCGCAAAATGCACTTTTTCTGGCATGCCCCCATAATCCAAGGAGATTTTACCCCAACCCTGCTTCTAAG GTAAATCCTCAGCACCTTGAGTACTTCAGCTTCTGTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTACAAGTGGG TATTGTTTTGGATCGTGTGTTTTTCTTGCAATTGGCTGGGAAGTATGTTACTTTAGAAGACATAAAGGATGCAGATCCAA ACTTATATACTAGATGCAAGCAAATATTAGACATGGATTCTGATTTCATTGATTCAGATGCATTAGGACTGACTTTTGTT AGAGAGGCGGAGGAATTAGGACACACAAAAGTGGTTGAGCTCTCCTTGTAG
Protein sequence (LotjaGi4g1v0162300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENPSVEHRNPSTPKFYDGDDVVSDLVCVRITQDDTVKAVNTLSSAAAHRSNPLQFSVRMISGGSTMVMQAYPEETVQSI LERIETLKRIPISEQRLIFMGKQLQREKTLAECSIQNGVNLQLVCRMRPTGHPQAWQVINDMVSVVLKLYHGGVVPGAVK TIKGFITTYLNMAPRIDDKDSASGYFQIFRSCSAVLVSLYLSPFTGNKDCADSSVRHFLTSCRNTLSVSLHAQCARVVLE FCTLLRVRGRVIGSEDPLYLFCRSTLGSLLETARVSCAASEIDNAKEEIIFVQDILPFVRELAKRLLVDLDLSMISPSTV GTLFNNVGDFTAFLIPLRKGIMEQQALKDVLLVGEVEEDLLGLYNDLLSKIDQCLQYLGQRWAGHEMMQRDDHDLDWSHY LSILKELYLISKLYDGAEEKLWNVLMCHRSVLCLLIVRYAKRTGEHQWILEHKPVTDFESRRHLAMLMFPEVIEDYEEMY EMLIDRSQLLSESFEYIARADPESLKAGLFIKFKNEEVTGPSVVREWFLLVCQAIFNPQNALFLACPHNPRRFYPNPASK VNPQHLEYFSFCGRVIALALMHRVQVGIVLDRVFFLQLAGKYVTLEDIKDADPNLYTRCKQILDMDSDFIDSDALGLTFV REAEELGHTKVVELSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 48 | 131 | 84 | 3.4E-17 | – | |
| PANTHER | 51 | 654 | 604 | 1.1E-189 | – | |
| PANTHER | 51 | 654 | 604 | 1.1E-189 | – | |
| ProSiteProfiles | 54 | 130 | 77 | 17.931 | ||
| SMART | 54 | 126 | 73 | 3.4E-10 | ||
| SUPERFAMILY | 55 | 142 | 88 | 7.83E-17 | ||
| CDD | 55 | 124 | 70 | 2.70323E-16 | – | |
| Pfam | 58 | 128 | 71 | 3.1E-15 | ||
| PRINTS | 65 | 85 | 21 | 1.0E-7 | ||
| PRINTS | 86 | 106 | 21 | 1.0E-7 | ||
| PRINTS | 107 | 128 | 22 | 1.0E-7 | ||
| Gene3D | 438 | 626 | 189 | 3.4E-34 | – | |
| SUPERFAMILY | 475 | 654 | 180 | 5.36E-36 | ||
| ProSiteProfiles | 501 | 656 | 156 | 28.589 | ||
| Pfam | 530 | 654 | 125 | 4.3E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ubiquitin-protein transferase activity | Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi4g1v0162300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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